PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G20240.4
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 393aa    MW: 41378.9 Da    PI: 9.513
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G20240.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.51.6e-17204237134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  OGLUM06G20240.4 204 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 237
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.4E-19198250IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-12198238No hitNo description
PROSITE profilePS5011412.268202234IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-14202237IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.65E-14203240No hitNo description
PfamPF003203.0E-15204237IPR000679Zinc finger, GATA-type
PROSITE patternPS003440204229IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MSTIYMSQLS ATLPLMEGEH HHHHQDHHQG HFQAFSLQPK DPPVLFPFVI SRRSSSSSSP  60
SDSTTLSYGS DHHMTQQQHQ HQALLEPQHM IGGSSAGIFA TPFPTVESIR DDMIERSQFD  120
PYDTEKLQAS CGLAKVVAGG KWSAVPAAKM KITRKMGEPS SGVVTGGAAT TVAPKKPRRR  180
PAQAYEDHGH GGAMGQAFGV IRVCSDCNTT KTPLWRSGPC GPKSLCNACG IRQRKARRAM  240
MASGLPASPN AAGPKAAAHS NVAAAAAAQP KVKKEKRADV DRSSLPFKKR CKAIQVEDHQ  300
TPPAATNAAA AAAIEETAES TTVAPPPAPT TKGGTLVDSI GLSWSKTHAT AAATASCSFR  360
PSPVAPGFAA AVQDEITDAA MLLMTLSCGL VRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173180PKKPRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0698510.0AK069851.1 Oryza sativa Japonica Group cDNA clone:J023034D16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641328.10.0protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
RefseqXP_015641329.10.0protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
RefseqXP_025882362.10.0protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
TrEMBLA0A0E0AB560.0A0A0E0AB56_9ORYZ; Uncharacterized protein
STRINGOGLUM06G20240.20.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.13e-19GATA family protein