PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G20240.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 461aa    MW: 48980.4 Da    PI: 9.4935
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G20240.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.21.9e-17272305134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  OGLUM06G20240.2 272 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 305
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.4E-19266318IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-12266306No hitNo description
Gene3DG3DSA:3.30.50.102.4E-14270305IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.268270302IPR000679Zinc finger, GATA-type
CDDcd002021.49E-13271308No hitNo description
PfamPF003203.7E-15272305IPR000679Zinc finger, GATA-type
PROSITE patternPS003440272297IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MAGGEEEEEA HDWRRSRAAS PSARGSRRSV VWQYLLSTCQ QGVQRCSSDL DAPRKHPSLK  60
ISVQLLPLMS TIYMSQLSAT LPLMEGEHHH HHQDHHQGHF QAFSLQPKDP PVLFPFVISR  120
RSSSSSSPSD STTLSYGSDH HMTQQQHQHQ ALLEPQHMIG GSSAGIFATP FPTVESIRDD  180
MIERSQFDPY DTEKLQASCG LAKVVAGGKW SAVPAAKMKI TRKMGEPSSG VVTGGAATTV  240
APKKPRRRPA QAYEDHGHGG AMGQAFGVIR VCSDCNTTKT PLWRSGPCGP KSLCNACGIR  300
QRKARRAMMA SGLPASPNAA GPKAAAHSNV AAAAAAQPKV KKEKRADVDR SSLPFKKRCK  360
AIQVEDHQTP PAATNAAAAA AIEETAESTT VAPPPAPTTK GGTLVDSIGL SWSKTHATAA  420
ATASCSFRPS PVAPGFAAAV QDEITDAAML LMTLSCGLVR S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241248PKKPRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0698510.0AK069851.1 Oryza sativa Japonica Group cDNA clone:J023034D16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641328.10.0protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
RefseqXP_015641329.10.0protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
RefseqXP_025882362.10.0protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
TrEMBLA0A0E0AB570.0A0A0E0AB57_9ORYZ; Uncharacterized protein
STRINGOGLUM06G20240.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.15e-19GATA family protein