PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM06G18870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 528aa MW: 56875.7 Da PI: 6.615 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.8 | 1.8e-31 | 125 | 178 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ OGLUM06G18870.1 125 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 178 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.601 | 121 | 181 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-29 | 121 | 179 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.2E-14 | 124 | 179 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.5E-22 | 125 | 180 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.2E-9 | 126 | 177 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 528 aa Download sequence Send to blast |
MGEVKEKEVV EIFEHDHDNK IRSPENSVPP AMVLDLNEGF GEGSEEGGVG EDGDEEDDDE 60 DDDDDDDGGS TSEVAGGGRS SSNNSSTNHN SGSDKDHDMN SSSSKADGGG DRVPTVRQYN 120 RSKLPRLRWT PDLHMAFVHA VERLGGQERA TPKLVLQMMN VRGLSIAHVK SHLQMYRSKK 180 LDHESGHERG AISSVFSPME FHMRRGDHRF HHHDMFFQRA AAAGVSPFSS RMLHENGGGF 240 FASRNPGLPE SSRLYGLFQR RQQAPMQTFD FKNCNNFSRN QEWAFNQQHA AARAAGAVNG 300 HGPAKGLIHE MIFRKEGKPT SHLFDVRDAI ASTRVTSATT AAAADHRLDG AGKAGNFDWI 360 GSSSSRPLTR TMSAAAAATM GDHHHLRWRG GAACSGAALG SLLERAKTKA TEAMRLETPV 420 KMTAAAVAAE EINGRTPDLQ LSLSPNAGDH RSAGKKRKFL SEQEVDSDKQ QLPLTLSLSL 480 RGGGDNGGGG GGEAAGRLEE EMTGSSSSKK AALGLSTLDL TMSIKALE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 6e-18 | 126 | 180 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-18 | 126 | 180 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-18 | 126 | 180 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-18 | 126 | 180 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073606 | 0.0 | AK073606.1 Oryza sativa Japonica Group cDNA clone:J033048N17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641453.1 | 0.0 | uncharacterized protein LOC4341235 isoform X1 | ||||
TrEMBL | A0A0E0AAN3 | 0.0 | A0A0E0AAN3_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM06G18870.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2754 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 3e-34 | G2-like family protein |