PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G18230.2

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 376aa MW: 41385.8 Da PI: 7.1012

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G18230.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.7	2e-52	10	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+e+d++k+ePwdL+ ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+ OGLUM06G18230.2 10 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKA 102 69**************************.9***********943444442456******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++ +g++ktLvfy grap+g+ktdW+mheyrl OGLUM06G18230.2 103 IFLANACRIGMRKTLVFYVGRAPHGKKTDWIMHEYRL 139 *********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.19E-59	5	159	IPR003441	NAC domain
PROSITE profile	PS51005	57.154	10	159	IPR003441	NAC domain
Pfam	PF02365	1.1E-27	11	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MHPSGGVLSV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREIDLNKL EPWDLKDRCR 60 IGTGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLANACR IGMRKTLVFY 120 VGRAPHGKKT DWIMHEYRLD QDNVDVQEDG WVVCRVFMKK SYQRGLNPAD MAAVDDDDLL 180 LHHHHPFPPA QLHGGAADHK HDGAGGHHHH HLMQPHHHYD DFPSFDPSMQ LPQLMSADQP 240 PPPPPSLLPG VPPSAAAALS SLDVECPQNL MKLTSAAAGG GATGLLHAGG DHRFATAATD 300 WSILDKLLAS HQNLDQLFQG RVIAGASSPA AMAAPSHHQH LMDQLAGGGG GAASSLQRLP 360 LQYLGCEAAD LLRFSK

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MHPSGGVLSV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREIDLNKL EPWDLKDRCR  60
IGTGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLANACR IGMRKTLVFY  120
VGRAPHGKKT DWIMHEYRLD QDNVDVQEDG WVVCRVFMKK SYQRGLNPAD MAAVDDDDLL  180
LHHHHPFPPA QLHGGAADHK HDGAGGHHHH HLMQPHHHYD DFPSFDPSMQ LPQLMSADQP  240
PPPPPSLLPG VPPSAAAALS SLDVECPQNL MKLTSAAAGG GATGLLHAGG DHRFATAATD  300
WSILDKLLAS HQNLDQLFQG RVIAGASSPA AMAAPSHHQH LMDQLAGGGG GAASSLQRLP  360
LQYLGCEAAD LLRFSK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-50	8	161	15	167	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-50	8	161	15	167	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-50	8	161	15	167	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-50	8	161	15	167	NO APICAL MERISTEM PROTEIN
4dul_A	4e-50	8	161	15	167	NAC domain-containing protein 19
4dul_B	4e-50	8	161	15	167	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028186	0.0	AB028186.1 Oryza sativa mRNA for OsNAC7 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644283.1	0.0	NAC domain-containing protein 76
Swissprot	Q5Z6B6	1e-146	NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBL	A0A0E0AAG0	0.0	A0A0E0AAG0_9ORYZ; Uncharacterized protein
STRING	OGLUM06G18230.2	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3461	37	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	4e-87	NAC family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]