PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G17330.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 199aa    MW: 21271.2 Da    PI: 11.0583
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G17330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.81.6e-192066349
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     i+ k +rqvtfskRr g++KKA+E+S+L +a +a++ fs+ g+++ +
  OGLUM06G17330.1 20 IDGKEKRQVTFSKRRRGLFKKASEISTLSGASIAIVSFSKAGNVFAF 66
                     78899**************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.19E-221080IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.7961070IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-221069IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-151232IPR002100Transcription factor, MADS-box
PfamPF003192.3E-192066IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-153247IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-154768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MGRPRGGTSK GKQKIEMCCI DGKEKRQVTF SKRRRGLFKK ASEISTLSGA SIAIVSFSKA  60
GNVFAFGSPS VDAVLRRHVV AGPSTSTSHA HAGGDVFADD GGDNPEVLNA LKRATDEAAA  120
EVAAEDARQS GVEGKITEAM AAGRRRFWWD AANVEALGEA ELPVFERALH KLRGAVVRRR  180
SGAKPPPPPP RRSKKKLLN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642715.11e-127agamous-like MADS-box protein AGL61
TrEMBLA0A0E0AA591e-141A0A0E0AA59_9ORYZ; Uncharacterized protein
TrEMBLB8B2W81e-141B8B2W8_ORYSI; Uncharacterized protein
STRINGOGLUM06G17330.11e-141(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2047878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-23AGAMOUS-like 62