PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G12970.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 422aa    MW: 46583.4 Da    PI: 7.5739
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G12970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011104125223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      +C+ C+k+F++  ++  H+r+H
  OGLUM06G12970.1 104 ECQVCHKRFKNDKSMFGHLRSH 125
                      6*******************99 PP
2zf-C2H211.60.00087275297123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y C++C++ Fs++  L  H+  H
  OGLUM06G12970.1 275 YMCKHCNEEFSTHQALGGHMAGH 297
                      89******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.037103130IPR007087Zinc finger, C2H2
SMARTSM003550.096103125IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.96E-8104125No hitNo description
PfamPF139123.0E-4104125IPR007087Zinc finger, C2H2
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
SuperFamilySSF576679.96E-8270297No hitNo description
Gene3DG3DSA:3.30.160.606.8E-4274301IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.596275302IPR007087Zinc finger, C2H2
SMARTSM003550.081275298IPR015880Zinc finger, C2H2-like
PfamPF139122.6E-7275300IPR007087Zinc finger, C2H2
PROSITE patternPS000280277298IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MSGCSWLCSL VILQAVCSAC WQVAGANSLR LAVGQIGGVF VYLQDPSLMS RRARDELVDG  60
SCSGDEDLAD HGAWPQPGGG AGGDHEAEAD VDVDGDGGSA GDVECQVCHK RFKNDKSMFG  120
HLRSHPNRGY KGATPPLKMS STPSSSSPVI PAGSPPPQPP PSSSSSLRPV GDSNSSMPTP  180
GISLTTYEKL AACVMLTLRR RYDRDQRQLQ APPKLERAGA GDQLATNMVE GAEGSSRAIV  240
RDEHEARRRK KGKRKLKEPR EEERKVKKEK KRHPYMCKHC NEEFSTHQAL GGHMAGHHKE  300
KRILLKEKQR ERSLVLEKEP ERSHHLMEGK HPERGLILEK KQLERSSIVL KEKQPDRSLI  360
LEEEQPEVVY QDKIDQTINW QKTERNEGAS YLGGGSNTAP IAQEDSRPPF GFDLNVEAPE  420
QE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248255RKKGKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061640.0AP006164.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1386G10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642158.10.0uncharacterized protein LOC107278701
TrEMBLA0A0E0A8L70.0A0A0E0A8L7_9ORYZ; Uncharacterized protein
STRINGOGLUM06G12970.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139162028