PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G10380.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-X1
Protein Properties Length: 956aa    MW: 103188 Da    PI: 7.9539
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G10380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.84e-07226243118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG+H Cq +CH+GpC++C
  OGLUM06G10380.1 226 CGNHACQDICHPGPCGEC 243
                      ****************** PP
2zf-NF-X1231.8e-07284301118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG H+C+ +CHeG+CppC
  OGLUM06G10380.1 284 CGVHRCKVTCHEGDCPPC 301
                      ****************** PP
3zf-NF-X116.61.7e-05379397119
         zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                      CG+H Cq lCH G CppC 
  OGLUM06G10380.1 379 CGQHGCQLLCHSGHCPPCL 397
                      ******************6 PP
4zf-NF-X1193.2e-06489505117
         zf-NF-X1   1 CGkHkCqklCHeGpCpp 17 
                      CG+H C++ CH+ pC+p
  OGLUM06G10380.1 489 CGMHACNRSCHPSPCDP 505
                      ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004380.023107125IPR000967Zinc finger, NF-X1-type
PfamPF014227.1109124IPR000967Zinc finger, NF-X1-type
CDDcd060081.06E-11152200No hitNo description
SMARTSM004380.0019162181IPR000967Zinc finger, NF-X1-type
PfamPF014220.014162179IPR000967Zinc finger, NF-X1-type
CDDcd060085.56E-8216259No hitNo description
SMARTSM004382.3E-4226245IPR000967Zinc finger, NF-X1-type
PfamPF014221.0E-4226243IPR000967Zinc finger, NF-X1-type
CDDcd060083.79E-13274322No hitNo description
SMARTSM004380.001284303IPR000967Zinc finger, NF-X1-type
PfamPF014224.7E-6284301IPR000967Zinc finger, NF-X1-type
CDDcd060083.87E-8369421No hitNo description
SMARTSM004387.2E-4379398IPR000967Zinc finger, NF-X1-type
PfamPF014220.0014379396IPR000967Zinc finger, NF-X1-type
SMARTSM004380.62436454IPR000967Zinc finger, NF-X1-type
SMARTSM004380.029489524IPR000967Zinc finger, NF-X1-type
PfamPF014220.0021489505IPR000967Zinc finger, NF-X1-type
PfamPF014227.7526552IPR000967Zinc finger, NF-X1-type
SMARTSM004380.16533554IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 956 aa     Download sequence    Send to blast
MVRRSAPVWS CGSCFSIFHL PCIRKWARSP ASAADASDPD SSWRCPGCQS VHAVPARELA  60
YTCFCGRRRE PPNDLFLTPH SCGEPCSKPL EKADPAVKAD DAAATRCPHV CVLQCHPGPC  120
PPCKAFAPDR LCPCGKQTIV RRCADRTTPV TCGQRCDRLL PCRRHRCEKV CHTGPCGDCN  180
VLISARCFCG KKTETLLCGE MELKGNLSEK DGVFSCSEAC SHMLSCGNHA CQDICHPGPC  240
GECELMPGKV TACHCGKTRL LEKRASCLDP IPTCDKVCDK KLPCGVHRCK VTCHEGDCPP  300
CVVRVEQRCR CGSSGQMVEC YKVLEEEFRC NKPCGRKKNC GRHRCSECCC PLSKPLARLE  360
GGNWDPHLCQ IPCGKKLRCG QHGCQLLCHS GHCPPCLETI FNDLTCACGR TSIPPPLPCG  420
TPTPSCPHQC LVSQPCGHPA THQCHFGDCP PCVVPVMREC IGGHVVLRNI PCGSKDIRCN  480
QPCGKNRQCG MHACNRSCHP SPCDPPPANG DASSSTGGRA SCGQVCGAPR RECKHTCTAP  540
CHPSSPCPDL RCEFPMTIAC SCGRITATVP CGAGGTANGD NMFEVSIIQK LPMPLQPVES  600
DGRRVPLGQR KLSCDEDCAK MERKRVLAEA FDITPPNLDA LHFGENSNAS DLLSDLFRRE  660
PKWVMAIEER CKFLVLGKTR GNSSGNLKVH VFCHMTKDKR DAIRVIADRW KLSVQAAGWE  720
PKRFITIHPT PKSKAPARIL GSKPGVSVAA SHPFFDPLVD MDPRLVVAML DLPRDADVSA  780
LVLRFGGECE LVWLNDKNAV AVFNDPARAA TALRRLDYGS AYQGAAVFLP SSSAQPGNVW  840
VAGQKDGVVA TKSSANPWKK ATASEPDPSS GDWTGVLGQA PGSVWRRGGD TVAQVMGTSN  900
RWNALESDAA TSSRPVEESK PAPRTDAVSS AGPSTAPPVS KMQPEVEVDD WEEACE
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643844.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A0E0PVW20.0A0A0E0PVW2_ORYRU; Uncharacterized protein
STRINGORUFI06G09920.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1