PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G08790.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 748aa MW: 82537.9 Da PI: 4.9536

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G08790.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35.4	1.8e-11	578	618	12	52
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + L+++F++++yps++++e LA++lgLt +qV+ WF R OGLUM06G08790.1 578 NQKLKAHFKEDPYPSRATKENLAQELGLTFNQVTKWFSSTR 618 589**********************************8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	13.183	564	624	IPR001356	Homeobox domain
SMART	SM00389	7.1E-12	567	628	IPR001356	Homeobox domain
CDD	cd00086	3.45E-12	569	622	No hit	No description
SuperFamily	SSF46689	1.84E-11	569	631	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-12	578	633	IPR009057	Homeodomain-like
Pfam	PF00046	6.2E-9	578	618	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence Send to blast
MDKTTTSDLV LDNDNIGSNA GSAQEPLTTN GKISGVRNRY KQTVKRGRKG SQISPSKTYP 60 LRSSHSNVRV LRSASKKKNE TPIVPTNDNT AVQRVAKKRK RSKPLRPAPS RVLRSTSEKK 120 NKAHNELLND GAGVQPAEKK RKVGRPPKGG TPKDDYLMIR KRVRYVLNRM NYEQSLIQAY 180 ASEGWKGQSL EKIRPEKELE RAKVEILRCK SRIREAFRNL DSLLSEGKLD ESMFDSAGEI 240 SSEDGDEGWL CPACDCKIDC IDVLNELQGV KLSIHDSWEK VFPEAASFLN GSKQIDASDL 300 PSDDSADNDY DPTLAQGHKV DEEKSSGEDG GEGLDSDDSS SEDSESSEKE KSKTSQNGRT 360 VDDLGLPSED SEDGDFDPAG PDSDKEQNDE SNSDQLDESD FTSDSDDFCA EIAKSCGQDE 420 ISGPSSSQIR TVDRTDGSGF DGEPNAENSN LAFMETELEQ DMVLPISSKR QVERLDYKKL 480 YNEAYGKASS DSSDDEEWYG NSTPEKGNLE DSETDSLAES PQGGKGFSRR APVRYHNNEH 540 TPQNVRPGGS VSDQQTEVLC SNSNGSTAKN RHFGPAINQK LKAHFKEDPY PSRATKENLA 600 QELGLTFNQV TKWFSSTRHY ARVAATKKEN NIENHTAENN NNTNTVDSIQ LRGSNDIVSV 660 DRNDMVSEER TGQSNLNEGT PLRSDTSCGQ SVAVTPMVHP ENQGNDSSSN VRTPNAKSAE 720 KLIPGLENSD EARRKAVQRE LRKMKTGR

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence Send to blast

MDKTTTSDLV LDNDNIGSNA GSAQEPLTTN GKISGVRNRY KQTVKRGRKG SQISPSKTYP  60
LRSSHSNVRV LRSASKKKNE TPIVPTNDNT AVQRVAKKRK RSKPLRPAPS RVLRSTSEKK  120
NKAHNELLND GAGVQPAEKK RKVGRPPKGG TPKDDYLMIR KRVRYVLNRM NYEQSLIQAY  180
ASEGWKGQSL EKIRPEKELE RAKVEILRCK SRIREAFRNL DSLLSEGKLD ESMFDSAGEI  240
SSEDGDEGWL CPACDCKIDC IDVLNELQGV KLSIHDSWEK VFPEAASFLN GSKQIDASDL  300
PSDDSADNDY DPTLAQGHKV DEEKSSGEDG GEGLDSDDSS SEDSESSEKE KSKTSQNGRT  360
VDDLGLPSED SEDGDFDPAG PDSDKEQNDE SNSDQLDESD FTSDSDDFCA EIAKSCGQDE  420
ISGPSSSQIR TVDRTDGSGF DGEPNAENSN LAFMETELEQ DMVLPISSKR QVERLDYKKL  480
YNEAYGKASS DSSDDEEWYG NSTPEKGNLE DSETDSLAES PQGGKGFSRR APVRYHNNEH  540
TPQNVRPGGS VSDQQTEVLC SNSNGSTAKN RHFGPAINQK LKAHFKEDPY PSRATKENLA  600
QELGLTFNQV TKWFSSTRHY ARVAATKKEN NIENHTAENN NNTNTVDSIQ LRGSNDIVSV  660
DRNDMVSEER TGQSNLNEGT PLRSDTSCGQ SVAVTPMVHP ENQGNDSSSN VRTPNAKSAE  720
KLIPGLENSD EARRKAVQRE LRKMKTGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	101	KKRKRS
2	96	103	KKRKRSKP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor involved in the regulation of gibberrelin (GA) signaling. Binds to the 5'-GATC-3' motif of HD16/EL1 promoter. Functions as a positive regulator of GA signaling by suppressing the expression of HD16/EL1, a negative regulator of GA signaling. {ECO:0000269\|PubMed:21951842}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gibberellin. {ECO:0000269\|PubMed:21951842}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB081340	0.0	AB081340.1 Oryza sativa Japonica Group HAZ1 mRNA for PHD-finger family homeodomain protein, complete cds.
GenBank	AK121314	0.0	AK121314.1 Oryza sativa Japonica Group cDNA clone:J023113A13, full insert sequence.
GenBank	FJ940197	0.0	FJ940197.1 Oryza sativa Japonica Group clone KCS150D11 PHD-finger family homeodomain protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644127.1	0.0	homeobox protein HAZ1 isoform X1
Swissprot	Q8H991	0.0	HAZ1_ORYSJ; Homeobox protein HAZ1
TrEMBL	A0A0E0A746	0.0	A0A0E0A746_9ORYZ; Uncharacterized protein
STRING	OGLUM06G08790.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4393	37	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	4e-50	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wen BQ,Xing MQ,Zhang H,Dai C,Xue HW Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1. J Integr Plant Biol, 2011. 53(11): p. 869-78 [PMID:21951842]