PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G08590.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 399aa    MW: 40123.2 Da    PI: 9.1589
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G08590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP133.71.7e-41672462137
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 
                      ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++      
  OGLUM06G08590.1  67 PPKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSIPshlrla 160
                      789******************************************************************9999899999999988888999999 PP

              TCP  89 .................................kaaksaakskksqksaasalnlakesr..akarar.are.rtrekmriknkln 137
                                                       +a +s+ +   s +s +  l+++  s   + a a+ +r+ r++++m+++++ +
  OGLUM06G08590.1 161 glagprfgggaraadawdrvvglgfggaadapsSATSSSSPLLLSFHSGSVGLDVSPPSAstSPAAADlSRKrRWEQEMQQQQQYQ 246
                      999999999999**************999999644444447777777777778777755422333333566668888888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-4471246IPR005333Transcription factor, TCP
PROSITE profilePS5136927.67573127IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDVTEDGGGG RRPNFPLQLL GKKEEQTCST SQSAGAGGGG GGGVVGANGS EAAAQGELQV  60
RTKAAAPPKR TSTKDRHTKV DGRGRRIRMP AICAARVFQL TRELGHKTDG ETIEWLLQQA  120
EPAVIAATGT GTIPANFTSL NISLRSSGSS LSIPSHLRLA GLAGPRFGGG ARAADAWDRV  180
VGLGFGGAAD APSSATSSSS PLLLSFHSGS VGLDVSPPSA STSPAAADLS RKRRWEQEMQ  240
QQQQYQQQMA GYTQSQIPAG TVWMVPSSNA QAAGGGAPPG GGGESIWTFP QSGSGGGGGA  300
ATVYRGVPSG LHFMNFPATP MALLPGGQQL GLAGAGGGGE GHPGILAALN AYRAQAAQPD  360
AGAAAQNAAQ GSSQHRQHQH HGGGGGGDER HESMSASDS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0642400.0AK064240.1 Oryza sativa Japonica Group cDNA clone:002-105-B01, full insert sequence.
GenBankAP0035130.0AP003513.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0690H04.
GenBankAP0035690.0AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641757.11e-157transcription factor TCP15
SwissprotQ93Z002e-48TCP14_ARATH; Transcription factor TCP14
TrEMBLA0A0E0A7250.0A0A0E0A725_9ORYZ; Uncharacterized protein
STRINGOGLUM06G08590.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37443479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.12e-43TCP family protein
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]