PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G06580.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 207aa    MW: 21830.4 Da    PI: 4.6034
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G06580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75e-172978255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +ykGVr +  +g+W+AeIr ps+   r r++lg+++t+e+Aa+a +aa  +l+g
  OGLUM06G06580.1 29 KYKGVRLRQ-WGKWAAEIRLPSS---RERIWLGSYDTPEKAARAFDAAFICLRG 78
                     8*****998.**********965...4*********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-262890IPR001471AP2/ERF domain
PROSITE profilePS5103222.1682988IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-192989IPR016177DNA-binding domain
CDDcd000184.98E-252990No hitNo description
SMARTSM003801.2E-302994IPR001471AP2/ERF domain
PfamPF008476.7E-102978IPR001471AP2/ERF domain
PRINTSPR003674.1E-93041IPR001471AP2/ERF domain
PRINTSPR003674.1E-95268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEPVSFMQKS AAAAADGGSA AQAAAERRKY KGVRLRQWGK WAAEIRLPSS RERIWLGSYD  60
TPEKAARAFD AAFICLRGVQ AIAGLNFPES PPPPTAARTG DLREVYAFAV SHANQPSAEA  120
APADIVVPAQ VATEESDGVV RGNAAPPPVQ VAAGSLDWSQ FMANPPPMYS PTATAGSQAM  180
WPVTAPAAEA DGEDDELATT CRWSFDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-152489973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882388.12e-54ethylene-responsive transcription factor ERF018-like
TrEMBLA0A0E0A6B21e-146A0A0E0A6B2_9ORYZ; Uncharacterized protein
STRINGOGLUM06G06580.11e-146(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.16e-32ERF family protein