PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G06330.2

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 237aa MW: 27497 Da PI: 9.525

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G06330.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53	6.2e-17	139	229	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k +++s+v+ +l+lp +f +++ + +++ t++l de+ +++ + ++++ l++GW++F a++L +gD +vF+l++r +f +v OGLUM06G06330.2 139 FVKPMLQSHVTGGFWLSLPTHFSRKYL-P-KRDETIRLVDEEDDEFDTLY--LANKRG--LSGGWRGFSIAHKLVDGDCLVFQLIQRAKF--KV 224 89**********************5.3.35669***********..555555..9**********************98888..99 PP EEE-S CS B3 95 kvfrk 99 ++r+ OGLUM06G06330.2 225 YIIRA 229 98886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	7.06E-24	132	230	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	7.3E-20	133	230	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.08E-26	137	228	No hit	No description
Pfam	PF02362	2.8E-15	139	229	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.928	139	230	IPR003340	B3 DNA binding domain
SMART	SM01019	4.1E-19	139	230	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MIEAESQMAE AASYEEQRRR QVEANKRKLE ELRLHHLSAA VRESAAKPSP VKQRKRKARA 60 PPGAGEDAPL RRSGRVANLP EKPKYRDEFQ DFEKRIRRSY GGKRRDLSNR VYATDEQRDY 120 AINAAQELEE ELGSDYPIFV KPMLQSHVTG GFWLSLPTHF SRKYLPKRDE TIRLVDEEDD 180 EFDTLYLANK RGLSGGWRGF SIAHKLVDGD CLVFQLIQRA KFKVYIIRAS SYYETDD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102980	0.0	AK102980.1 Oryza sativa Japonica Group cDNA clone:J033115O10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642147.1	1e-172	B3 domain-containing protein Os06g0194400
Swissprot	Q69V36	1e-173	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A0E0A680	1e-173	A0A0E0A680_9ORYZ; Uncharacterized protein
STRING	OGLUM06G06330.1	1e-174	(Oryza glumipatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	2e-62	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]