PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G03030.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 628aa    MW: 66206.9 Da    PI: 7.7321
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G03030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.8e-30279338159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh 
  OGLUM06G03030.1 279 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQVQRCADDMSILITTYEGTHNHA 338
                      58***************************99****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-31264338IPR003657WRKY domain
SuperFamilySSF1182906.41E-27272338IPR003657WRKY domain
PROSITE profilePS5081127.783274340IPR003657WRKY domain
SMARTSM007741.2E-36279339IPR003657WRKY domain
PfamPF031066.1E-27280337IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MKEEMIKGDS KQLASMYMKE EMIKGERQLG THEDRLKDEV IKDGDKISDG NFFKSLQNIS  60
STKEEVCSPG PIERSCMDSS LLNMKAQNKG QDDKLESTRA EMGEVREENE RLKTLLSRIS  120
HDYRSLQTHF YDVLQQGRAK KLPDSPATDI EEPEFVSLRL GTSTSKCKKE DKSTTSSEVK  180
GSTEDFLKIK GGLSLGLSDC RVDANNSEKV QPDVMTLSPE GSFEDARDDT AETTEQWPPS  240
KMLKNLRSVG AEAEDDIAPQ PQVKKARVSV RARCDAPTMN DGCQWRKYGQ KIAKGNPCPR  300
AYYRCTVAAG CPVRKQVQRC ADDMSILITT YEGTHNHALS VSATAMASTT SAAASMLISG  360
SSSTSLAAYP AAAASPALAF DASSKPPLIG GRPFFLPTAA AAAITSTPSY PTITLDLTSP  420
AAAATSSHAA FSLSNRFSHT RYPSTGFTFS GSGPSSAPWP GYLSYGASLS AHPYKAGGGK  480
SSSSFEAALS SINGSRQQGG GGGSGSAPLY QMQQKAAAAA PPPPSVITDT IAKAITADPS  540
FHTALAAAIT SYVGKKGSPP ASGGEDSKVG LKWGEHLGLG LTHSSPSTAT AAAAASSSSQ  600
MFLQPSLGLS GSTTSASTSP VTNREQAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-202793391776Probable WRKY transcription factor 4
2lex_A4e-202793391776Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037670.0AP003767.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0036F10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643468.10.0probable WRKY transcription factor 72 isoform X1
TrEMBLA0A0E0A4Y10.0A0A0E0A4Y1_9ORYZ; Uncharacterized protein
STRINGOGLUM06G03030.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-64WRKY DNA-binding protein 72