PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G00620.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 260aa MW: 28443.1 Da PI: 11.0519

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G00620.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.9	2.6e-29	179	229	2	52
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ OGLUM06G00620.1 179 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQN 229 9*************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.73E-14	176	231	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.3E-26	177	233	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-21	179	232	IPR006447	Myb domain, plants
Pfam	PF00249	4.4E-7	180	230	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MMELFPRQLD LSLHISTPSC FSPSPASAST TASSWPWTTK QQLPEEEEAA ATTSTTTSSR 60 SAPPLLLCNS DVFSTRGSST TNTNHHADGG LANSQQLKAA ARQPIHGIPV YHGHQQQQRR 120 QLHHPYDVVG TRQSDGGRRL FSHHVGVGVT PSRTLSSSSS SPVRLLPRLP PGRRSVRAPR 180 MRWTTTLHAR FVHAVELLGG HERATPKSVL ELMDVKDLTL AHVKSHLQNT KLSVDLETSM 240 LRLPGRPNLE FTLGIGKASQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-13	180	231	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-13	180	231	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-13	180	231	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-13	180	231	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-13	180	231	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-13	180	231	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-13	180	231	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-13	180	231	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-13	180	231	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-13	180	231	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-13	180	231	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-13	180	231	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006656560.1	3e-43	PREDICTED: probable transcription factor KAN2
TrEMBL	A0A0E0A415	0.0	A0A0E0A415_9ORYZ; Uncharacterized protein
STRING	OGLUM06G00620.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17435	11	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	1e-28	G2-like family protein