PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM06G00600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 422aa MW: 45066.7 Da PI: 4.7499 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50 | 5.6e-16 | 308 | 399 | 6 | 98 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkv 96 +s+ + + ++++p +f h + ++e +t + ++ g+sW + +++ ++ l +GW+eF+ +n+L +gD +vF+l+ g + e+ v++ OGLUM06G00600.1 308 AKSHLHPKFQMWIPPRFQ--HRLAEPEARTAAVLHSGGKSWATSY--CGHLKMKKLDAGWSEFAVDNRLLVGDACVFELVamGAtGGLEFQVQI 397 4566667799*******6..6666778889***************..*******************************7644555666677776 PP E- CS B3 97 fr 98 +r OGLUM06G00600.1 398 LR 399 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1580 | 6.8E-71 | 18 | 249 | IPR000845 | Nucleoside phosphorylase domain |
SuperFamily | SSF53167 | 2.36E-38 | 20 | 237 | IPR000845 | Nucleoside phosphorylase domain |
Pfam | PF01048 | 7.7E-24 | 21 | 247 | IPR000845 | Nucleoside phosphorylase domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-18 | 298 | 399 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-17 | 299 | 399 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.39E-14 | 301 | 399 | No hit | No description |
PROSITE profile | PS50863 | 13.042 | 303 | 401 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.7E-4 | 303 | 401 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.1E-14 | 306 | 399 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000003 | Biological Process | reproduction | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009116 | Biological Process | nucleoside metabolic process | ||||
GO:0019509 | Biological Process | L-methionine biosynthetic process from methylthioadenosine | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008930 | Molecular Function | methylthioadenosine nucleosidase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MAPPSDSDDS APIPAGAISK LLIVIAMQTE ALPLVNKFHL VEAEESIFPK GAPWIRYHGN 60 YKGLHVDLVW PGKDPVLGVD CVGTVSAALV TYASIQSLKP DLIINAGTAG GFKAKGADIG 120 DVYLASDVAF HDRRIPIPVF DMYGIGTRKT FATPNILKEL NLKVGKLSTG DSLDMSPHDE 180 SAILNNDATV KDMEGAAVAY VADMFSTPAI FVKAVTDIVD GEKPTAEEFL QNLVAVTAAL 240 DKAVTEVMEL DTDPTKLKAK PIIKPKVEPC DDDDELPPPP PPASGSGEDW EATTPLAAGN 300 PFFTALIAKS HLHPKFQMWI PPRFQHRLAE PEARTAAVLH SGGKSWATSY CGHLKMKKLD 360 AGWSEFAVDN RLLVGDACVF ELVAMGATGG LEFQVQILRG GLPAEVVTSK GLTSDQPILI 420 VD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2h8g_A | 1e-112 | 18 | 250 | 26 | 258 | 5'-Methylthioadenosine Nucleosidase |
2h8g_B | 1e-112 | 18 | 250 | 26 | 258 | 5'-Methylthioadenosine Nucleosidase |
2qsu_A | 1e-112 | 18 | 250 | 26 | 258 | 5'-methylthioadenosine nucleosidase |
2qsu_B | 1e-112 | 18 | 250 | 26 | 258 | 5'-methylthioadenosine nucleosidase |
2qtg_A | 1e-112 | 18 | 250 | 26 | 258 | 5'-methylthioadenosine nucleosidase |
2qtg_B | 1e-112 | 18 | 250 | 26 | 258 | 5'-methylthioadenosine nucleosidase |
2qtt_A | 1e-112 | 18 | 250 | 26 | 258 | 5'-methylthioadenosine nucleosidase |
2qtt_B | 1e-112 | 18 | 250 | 26 | 258 | 5'-methylthioadenosine nucleosidase |
3lgs_A | 1e-112 | 18 | 250 | 26 | 258 | 5'-methylthioadenosine nucleosidases |
3lgs_B | 1e-112 | 18 | 250 | 26 | 258 | 5'-methylthioadenosine nucleosidases |
3lgs_C | 1e-112 | 18 | 250 | 26 | 258 | 5'-methylthioadenosine nucleosidases |
3lgs_D | 1e-112 | 18 | 250 | 26 | 258 | 5'-methylthioadenosine nucleosidases |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB110165 | 0.0 | AB110165.1 Oryza sativa Japonica Group mRNA for hypothetical protein, complete cds, clone: 12FPG037. | |||
GenBank | AF458088 | 0.0 | AF458088.1 Oryza sativa methylthioadenosine/S-adenosyl homocysteine nucleosidase mRNA, complete cds. | |||
GenBank | AK066172 | 0.0 | AK066172.1 Oryza sativa Japonica Group cDNA clone:J013056A05, full insert sequence. | |||
GenBank | AK104797 | 0.0 | AK104797.1 Oryza sativa Japonica Group cDNA clone:001-039-H06, full insert sequence. | |||
GenBank | CT832813 | 0.0 | CT832813.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN021C21, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643737.1 | 1e-176 | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 | ||||
TrEMBL | A0A0E0A413 | 0.0 | A0A0E0A413_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM06G00600.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6441 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 1e-06 | related to vernalization1 1 |