PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM06G00440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 199aa MW: 21585.6 Da PI: 9.8329 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 79.6 | 3.1e-25 | 33 | 138 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS......-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesg......rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+kv tpsdv+k++rlv+pk++ae++ ++ ++ l +ed +g +W+++++y+ +s++yv+tkGW+++v++++L +gD+v F OGLUM06G00440.1 33 FEKVVTPSDVGKLNRLVVPKHYAEKYfplgpaARTSPAGTVLCFEDARGgggggdSTWRFRYSYWSSSQSYVITKGWSRYVRDKRLAAGDTVSF 126 99***************************999445557789*****9999******************************************** PP EE-SSSEE..EEEEE CS B3 83 kldgrsefelvvkvf 97 r +++l++ + OGLUM06G00440.1 127 C---RAGARLFIDCR 138 9...44555666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.5E-33 | 27 | 150 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.19E-25 | 29 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.08E-17 | 32 | 126 | No hit | No description |
PROSITE profile | PS50863 | 11.66 | 33 | 141 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-22 | 33 | 139 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-15 | 33 | 141 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MATIVAWESR NLQLQGGGGG HGGGGGERRE YMFEKVVTPS DVGKLNRLVV PKHYAEKYFP 60 LGPAARTSPA GTVLCFEDAR GGGGGGDSTW RFRYSYWSSS QSYVITKGWS RYVRDKRLAA 120 GDTVSFCRAG ARLFIDCRKR AASVSSSSLV PPALIKVQLP PSRPVVDEEE AACGRRCLRL 180 FGVDLQLRAD ASPALDLQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-41 | 29 | 140 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-41 | 29 | 140 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. | |||
GenBank | CT829912 | 0.0 | CT829912.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128K13, full insert sequence. | |||
GenBank | KC019173 | 0.0 | KC019173.1 Oryza rufipogon cultivar RBPH54 insect-resistance protein (BPH29) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642534.1 | 1e-112 | B3 domain-containing protein Os06g0107800 | ||||
Swissprot | Q5VS55 | 1e-113 | Y6078_ORYSJ; B3 domain-containing protein Os06g0107800 | ||||
TrEMBL | A0A0E0A3Z0 | 1e-142 | A0A0E0A3Z0_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM06G00440.1 | 1e-143 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12947 | 29 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36080.1 | 4e-41 | B3 family protein |