PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G00040.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 679aa    MW: 75393 Da    PI: 6.5659
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G00040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.31.1e-47191491128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp+GfrF+Ptdeelv +yLk k++g++++    i++vd+ ++ePwdLp +  +k+++ ew+fF++rd+ky+ g+r+nr+t++gyWkatgkd+ +
  OGLUM06G00040.1  19 LPVGFRFRPTDEELVRHYLKGKIAGRSHPDLLLIPDVDLSTCEPWDLPaMsVIKSDDPEWFFFAPRDRKYPGGHRSNRSTAAGYWKATGKDRLI 112
                      79*************************999889***************5347777888************************************ PP

              NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s+  g l+g+kktLvf++grap+g +t W+mheyr 
  OGLUM06G00040.1 113 RSRpAGPLIGIKKTLVFHRGRAPRGLRTGWIMHEYRT 149
                      **988889***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-5610170IPR003441NAC domain
PROSITE profilePS5100555.37219170IPR003441NAC domain
PfamPF023654.3E-2620148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MKQGKVEMTP AVAAAAAVLP VGFRFRPTDE ELVRHYLKGK IAGRSHPDLL LIPDVDLSTC  60
EPWDLPAMSV IKSDDPEWFF FAPRDRKYPG GHRSNRSTAA GYWKATGKDR LIRSRPAGPL  120
IGIKKTLVFH RGRAPRGLRT GWIMHEYRTT EPHFQSGKNG KFVLYRLFNK HEQDDTHTPA  180
SNLDQQLHSM SSQGNPQNGT PAVQLALASI MKDHQTLPSS GFTQLTEIQD ASTSVHDKEK  240
TVAHDDAFLD VLSQLPDLEP EQRYNGFPNI TSPIRPYSDH PFVGNLGEQD LSAHFGSTLS  300
EQDLQSLLFS PNYTKMDKHP TGNVESNPTA SSSNPNNNTL LMDSWRKNDL YQMLLIQCAD  360
NTDATCRSSS INAPQTETSD ANLEARAQSS SMVYSGVAEG SLLCNQDQLH SAINPHMESQ  420
KSGAFCWAGL QTPYPQHWFD TMVEPCRSGM TFSDALKEQG QEQAPSMKHL TAQDLVDPQQ  480
GTAARRIRLV CSVERASVSQ PVSSHLQSEY EAGSCCNTRN SSNNKKKSVR SEDEAGSCCN  540
TGSSSNNHSE ENDDAASQIM DGEPMHIQCK EDTPIQVDHS VEVMDKLQGF SFHEEMLVHA  600
NQPRGTNLKQ RLLRAESRNS NENNAPSLET RGQQHAPHIQ IWTSSVVRLG WGWQWPALFV  660
MAGSLLLLVG VWKSLNHTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-43131739171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641780.0AK064178.1 Oryza sativa Japonica Group cDNA clone:002-104-B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642953.10.0NAC domain-containing protein 7
TrEMBLA0A0E0A3S20.0A0A0E0A3S2_9ORYZ; Uncharacterized protein
STRINGOGLUM06G00040.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134132529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-65NAC transcription factor-like 9