PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G27920.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 286aa    MW: 30384 Da    PI: 10.2771
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G27920.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.45.5e-22151213163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkre+rkq+NRe+ArrsR+RK+ae+e L++ v++L+aeN++L++e+++l++ ++kl+ e+
  OGLUM05G27920.2 151 ERELKREKRKQSNRESARRSRLRKQAETEDLATQVESLTAENTSLRSEISRLSESSEKLRLEN 213
                      89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.7E-17148210No hitNo description
PfamPF001701.8E-20151213IPR004827Basic-leucine zipper domain
SMARTSM003388.4E-22151215IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.196153216IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.25E-11154209No hitNo description
CDDcd147024.06E-19156204No hitNo description
PROSITE patternPS000360158173IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MANPLSMEPA KSASSKEKGS NKKLKEVDGA AVSTGSGDSK KTMTSSGDYS AEGSSDVNDL  60
KVGKTGRKRR LDDGAGAETS AAAKMENALP PSHILGSTAV LPNHSFPAQV IRPSATNVAN  120
SRALGTPISP LPGVIIPSHT GVSTELLIKD ERELKREKRK QSNRESARRS RLRKQAETED  180
LATQVESLTA ENTSLRSEIS RLSESSEKLR LENSALMGKL KDPAASTQAE TSLQKTTTAS  240
SPRVVENFLS MIDNTNKTSV RHTEHAEPKL RQLLGSGPAT DVVAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167173RRSRLRK
2167174RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0654400.0AK065440.1 Oryza sativa Japonica Group cDNA clone:J013020K21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640745.10.0common plant regulatory factor 1
TrEMBLA0A0E0A3000.0A0A0E0A300_9ORYZ; Uncharacterized protein
STRINGOGLUM05G27920.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.24e-13G-box binding factor 3