PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM05G27800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 291aa MW: 31805.8 Da PI: 9.8811 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.9 | 3.6e-16 | 77 | 124 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ lv++++ G g W+t ar g++Rt+k+c++rw++yl OGLUM05G27800.1 77 KGPWTMEEDLSLVNYIAANGEGAWNTLARAAGLNRTGKSCRLRWLNYL 124 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.088 | 72 | 128 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.58E-22 | 75 | 158 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-11 | 76 | 126 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-14 | 77 | 124 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-21 | 78 | 142 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.38E-8 | 79 | 124 | No hit | No description |
SMART | SM00717 | 15 | 129 | 164 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 4.368 | 142 | 162 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-6 | 143 | 161 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 291 aa Download sequence Send to blast |
MHRIIIISHL ASRRASLPRA RMLFFLYSAV YKRGRRAARC VRRRHRPYVV EPPVAMQYTV 60 EGSGGGGVQT VEAAVRKGPW TMEEDLSLVN YIAANGEGAW NTLARAAGLN RTGKSCRLRW 120 LNYLRPDVRR GNITPEEHTL IIARYLPGRT DNEIKNFWRT KIQKKHRKST DGIYATTTSE 180 SIMPAATVHQ NTVAEDQGSS SVSGRTTTAT VAVTKEYATE APPPSGMSSG SYLDQLQPGY 240 ASSIHGGQDG GAAAAAAGDV VVSDEFLAAS SDNFWALEDL WPTVQSLHGN C |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-17 | 77 | 165 | 7 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC120986 | 0.0 | AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence. | |||
GenBank | AC120990 | 0.0 | AC120990.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0040E06, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639020.1 | 1e-151 | transcription factor MYB21 | ||||
TrEMBL | A0A0E0A2Y6 | 0.0 | A0A0E0A2Y6_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM05G27800.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G27810.1 | 1e-56 | myb domain protein 21 |