PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G27800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 291aa    MW: 31805.8 Da    PI: 9.8811
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G27800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.6e-1677124148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT eEd+ lv++++  G g W+t ar  g++Rt+k+c++rw++yl
  OGLUM05G27800.1  77 KGPWTMEEDLSLVNYIAANGEGAWNTLARAAGLNRTGKSCRLRWLNYL 124
                      79********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.08872128IPR017930Myb domain
SuperFamilySSF466899.58E-2275158IPR009057Homeodomain-like
SMARTSM007173.5E-1176126IPR001005SANT/Myb domain
PfamPF002495.9E-1477124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-2178142IPR009057Homeodomain-like
CDDcd001671.38E-879124No hitNo description
SMARTSM0071715129164IPR001005SANT/Myb domain
PROSITE profilePS500904.368142162IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-6143161IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MHRIIIISHL ASRRASLPRA RMLFFLYSAV YKRGRRAARC VRRRHRPYVV EPPVAMQYTV  60
EGSGGGGVQT VEAAVRKGPW TMEEDLSLVN YIAANGEGAW NTLARAAGLN RTGKSCRLRW  120
LNYLRPDVRR GNITPEEHTL IIARYLPGRT DNEIKNFWRT KIQKKHRKST DGIYATTTSE  180
SIMPAATVHQ NTVAEDQGSS SVSGRTTTAT VAVTKEYATE APPPSGMSSG SYLDQLQPGY  240
ASSIHGGQDG GAAAAAAGDV VVSDEFLAAS SDNFWALEDL WPTVQSLHGN C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-17771657107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209860.0AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAC1209900.0AC120990.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0040E06, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639020.11e-151transcription factor MYB21
TrEMBLA0A0E0A2Y60.0A0A0E0A2Y6_9ORYZ; Uncharacterized protein
STRINGOGLUM05G27800.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.11e-56myb domain protein 21