PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G27710.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 634aa    MW: 66136.3 Da    PI: 7.2683
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G27710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-30372430259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +v+++tYeg+Hnh+
  OGLUM05G27710.1 372 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTVLITTYEGNHNHP 430
                      7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-33356432IPR003657WRKY domain
SuperFamilySSF1182901.26E-27364432IPR003657WRKY domain
PROSITE profilePS5081129.987366432IPR003657WRKY domain
SMARTSM007749.7E-37371431IPR003657WRKY domain
PfamPF031061.1E-26373430IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MESYVGVKRK NVAVGGDVGR EMPVAPPSSS SAAVGMVEFP AAAAGLGYAG MTAKEAGGGY  60
QERRVVVGEM DFFKTAEKRG ERKEPPPPLP LPPATATAAA SGHAGASPDD LSLNKDDLTI  120
NMGLLVGRRR NSGSEESIVD DGGVSSNDEE HREAKAALAV TKAEIGRLSE ENKRLKNMLS  180
NVTTKYNSLQ MQFVTLMQQR RSVLAAPIHQ QELLDPEKKE QEGSQQQQQQ LIPRQFISLG  240
SASLQPDVEA PHSVVVVGGG GGDVCAPSSS NPDAAVPAMM PLPHFDHHNH HHPIHGGRER  300
GSSPAEADHH RHHQQEQPPP QQQQQQLPPS WLPADKVPRF LPGKGPEPVP EAATMRKARV  360
SVRARSDAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA AGCPVRKQVQ RCAEDRTVLI  420
TTYEGNHNHP LPPAAMAMAS TTAAAASMLL SGSMPSADGS LMAGSNFLAR AVLPCSSTVA  480
TISASAPFPT VTLDLTQTAP PPPPASSTQP QPPRPEPAQL QAALAEAARP VALPQLFGQK  540
LYDQSKLSAV QAVAGTKGSD GGALADTVNA ATAAIASDPN FTAVLAAALT SYIGSSSGSG  600
GGGAGGSSGT VQPLMSGGGG DSCSRDDKIG EQNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-21362432877Probable WRKY transcription factor 4
2lex_A1e-21362432877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209860.0AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881266.10.0probable WRKY transcription factor 31
TrEMBLA0A0E0A2X30.0A0A0E0A2X3_9ORYZ; Uncharacterized protein
STRINGOGLUM05G27710.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126952734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.18e-89WRKY family protein