PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM05G27370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HB-other | ||||||||
Protein Properties | Length: 1850aa MW: 205789 Da PI: 5.1823 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.6 | 4.9e-19 | 59 | 113 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ + +++yp++++r+eL+ klgLt+rq ++WF+ rR k++k OGLUM05G27370.1 59 KRVMKTPYQLEVLERTYTEDPYPNETMRAELSVKLGLTDRQLQMWFCHRRLKDRK 113 8999*************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.52E-17 | 41 | 113 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-17 | 51 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.649 | 54 | 114 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-17 | 56 | 118 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.19E-14 | 57 | 114 | No hit | No description |
Pfam | PF00046 | 9.6E-17 | 59 | 113 | IPR001356 | Homeobox domain |
PROSITE profile | PS50827 | 15.766 | 618 | 677 | IPR018501 | DDT domain |
SMART | SM00571 | 2.2E-18 | 618 | 677 | IPR018501 | DDT domain |
Pfam | PF02791 | 7.0E-16 | 620 | 674 | IPR018501 | DDT domain |
Pfam | PF05066 | 2.9E-15 | 796 | 863 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 6.7E-10 | 1018 | 1060 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 8.0E-13 | 1197 | 1268 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1850 aa Download sequence Send to blast |
MDSSGDGGDE GAGAAPAGVE EESPAPASPP APAPASASAP VPAAVGGGAG ASGSSGKVKR 60 VMKTPYQLEV LERTYTEDPY PNETMRAELS VKLGLTDRQL QMWFCHRRLK DRKPPPKRQQ 120 LEEEVPVPVM APPPVLPPPL PHSELTMGTG GMYGEPLLPP SSRRGTGRPS AVPRISASEV 180 ARRYYEPPQV MLPPLAPMQL TRAEHRVIDS VERLIGEPLR EDGPVLGVEF DPLPPGAFGA 240 PIVPEQQRQP FRSYEAKMFS GHDTKHIKAS AFLPSIDPFV PSTVSGKRKS MTGSSSHLGS 300 RAVREYQFIP EQSSDIYERT TQSRYYDVST EASDSRMSTG SRFLHGVEKA PGYTFHGQIS 360 GSSHLSLHGR PPVFSSGSTD YEMDPSNINS SSVPNESQYG IPQVAGFENS IAPSDRMVYH 420 DDDAFRMERK RKHSEEAKIA KEVEAHEKRI RKELEKQDML NRKREEQVRR EMERNDRERK 480 KEEERLLREK QKEEERFQRE QRREHKRMEK YLLKQSLRAE KIRQKEELRK EKEAARQKAA 540 NERATARRIA REYMELMEDE RLELMELVSR SKGLPSMLSL DSDTLQQLDS FRGMLRQFPS 600 EIVRLKVPFS IKPWTSSEDN IGNLLMVWKF FITFADVLGI PSFTLDEFVQ SLHDYDSRLL 660 GELHVALLKS IIKDIEDVAR TPSVASGMTA NPGGGHPQIV EGAYDWGFNI LAWQRHLNLL 720 TWPEILRQFG LSAGLGPQLR KRNAENVNNH DDNEGRNGED VISILRSGSA AVNAAAKMKE 780 RGYGNRRRSR HRLTPGTVKF AAFHVLSLEG SQGLTILEVA EKIQKSGLRD LTTSKTPEAS 840 ISAALSRDSK LFERTAPSTY CVKTPYRKDP ADSEAVLAAA REKIRVFQNT ISECEEVEKD 900 VDDAERDEDS ECDDADDDPD GDEVNIEEKD VKAPLVKAQD GGMPTAVGDI KKETNSIVNS 960 LTTPLIHTKS SESSSLRTLD KSVQVRTTSD LPAEISSDNH EGASDSAQDA EIDESNQGES 1020 WVQGLAEGDY CDLSVEERLN ALVALIGVAT EGNSIRAVLE ERLEAASALK KQMWAEAQLD 1080 KRRSREEFSS KMQYDSGMGL KTDVDQQNTL AESNLTPVHN LVKDSNGNGS LVNNELPVDQ 1140 QSQPNACSVV HERNGVRQEF SANPENLSGQ QYVTSEKTRS QLKSYIGHKA EQLHVYRSLP 1200 LGQDRRRNRY WQFSTSASPD DPGSGRIFFE SRDGYWRLID SIETFDALVS SLDTRGIRES 1260 HLHSMLQSIE PTFKEAIGRK RCASIEPSAG RVLKNGTSEI ISPNHSNEFG SPCSTLSGVA 1320 TDSAMAYSDS FRIELGRNDV EKTAISERAD LFIKWMWKEC NNHQPTCAMK HGKKRCSELI 1380 QCCDFCYQIY LAEETHCASC HKTFKSIHNI SEHSSQCEEK RRTDPNWKMQ ISDDSVPVGL 1440 RLLKLLLATV EASVPAEALE PFWTDVYRKS WGVKLYSTSS TKEVFEMLTI LEGAIRRDFL 1500 SSDFETTTEL LNLSTQDSAS RNFPRSGSAD VLPWVPDTVA AVVLRLLDLD SAISYTLRQK 1560 VGSNKERGAG EFMKLPPRYT PAKTKQETEP MGTGFDRQET WLTPSNGRGC RGGRGRGSRG 1620 GSRGGRSRSR GGKVPRGISS SPKIEFRGYS ASAVSSEKAP RKYARRGRNR GRGRGLRTVR 1680 PRQPSDIGAR SIPKPNLLGS FSMLRNAKHT TAMESPQSSG AEEWGLERRP SYVKDGEDNS 1740 ASQSEESSEE NSEPMNEEYD EPLPDYSRDN SGSSPLQMMD DGSDDNEEDA EGDEDGEDYD 1800 AEQHVDEDND DAEMGEDDVE DNDDGDGGGG GAENGDEDED GTSYSSEYSE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121237 | 0.0 | AK121237.1 Oryza sativa Japonica Group cDNA clone:J023095K21, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639400.1 | 0.0 | homeobox-DDT domain protein RLT2 isoform X1 | ||||
TrEMBL | A0A0E0A2S4 | 0.0 | A0A0E0A2S4_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM05G27370.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2283 | 33 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.1 | 0.0 | Homeodomain-like transcriptional regulator |