PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G23780.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 311aa    MW: 32615 Da    PI: 7.4823
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G23780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.21.2e-2971173389
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 
                      g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+++a+ +i++l+ ++++++    +++ + +a++s ++        
  OGLUM05G23780.1  71 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLINAAQVEIDKLPPLQFPPH----DHDLVAAAASSMAPppfanggd 160
                      78*************************************************************99999....2222222221111122223334 PP

              TCP  89 ............k 89 
                                  +
  OGLUM05G23780.1 161 ghhgasassmleD 173
                      4443333333330 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.62672130IPR017887Transcription factor TCP subgroup
PfamPF036343.9E-2672134IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDRSSQYCYT SNHEQLKMIS NNSTNEELGG GGRKAADQPS GGGGAAAAVA NSRHWSASTE  60
SRIVRVSRVF GGKDRHSKVR TVKGLRDRRV RLSVPTAIQL YDLQDRLGLS QPSKVVDWLI  120
NAAQVEIDKL PPLQFPPHDH DLVAAAASSM APPPFANGGD GHHGASASSM LEDGDKAAGG  180
GGMKAFMSLS NSLGLLNAAT MPATLAAHHH HHHHAAAYYA AAESWGNGGN GGHHHDVSHG  240
VSPSAHNSPF PSLLSLAPGS HHQFVFYSPE GGGFAVKEAA AEQFPVDSLD HSQGQLTLSS  300
ARSFLHSGSQ G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2077131155Putative transcription factor PCF6
5zkt_B2e-2077131155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1306040.0AC130604.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1155G07, complete sequence.
GenBankAK0699380.0AK069938.1 Oryza sativa Japonica Group cDNA clone:J023038I07, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637968.10.0transcription factor TCP13
TrEMBLA0A0E0A1I80.0A0A0E0A1I8_9ORYZ; Uncharacterized protein
STRINGOGLUM05G23780.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.18e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5