PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G21510.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 302aa    MW: 32441 Da    PI: 4.8827
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G21510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.31.8e-24109168258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                      +D + WrKYGqKe+k+s++pr YYrC+++   gC+++k+v++s+++p++ ++tY geH +
  OGLUM05G21510.1 109 HDNFLWRKYGQKEIKNSKYPRFYYRCSYRddhGCTATKQVQQSEDNPSLYVVTYFGEHFC 168
                      69**************************99999*************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-25102169IPR003657WRKY domain
PROSITE profilePS5081120.518103166IPR003657WRKY domain
SuperFamilySSF1182905.89E-24105169IPR003657WRKY domain
SMARTSM007746.2E-35108170IPR003657WRKY domain
PfamPF031065.7E-24110168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MARTNAASRH VAKGRKAAAH LHSLLGQRLP AAAGSPSSST LHGLLVLTEQ ILRCFDRALA  60
ALHGGAAGTW DDDAAGSGRK CKPERGEVGT RAAAASSKRV RVEKKGTTHD NFLWRKYGQK  120
EIKNSKYPRF YYRCSYRDDH GCTATKQVQQ SEDNPSLYVV TYFGEHFCGR VADVDGGPVV  180
AGDDSEESEE LMVISFGSSG GAAAMGGASA AYPWPCCGED VKNSGASQPW SLPDWEGVPP  240
LTASVAEELI EESTPEPELM DLISSPDLEY SLLDLELGES SFGVDGFINF DELSVYSIDN  300
AR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-201101681068OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00070PBMTransfer from AT5G01900Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1447379e-65AC144737.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0018K15, complete sequence.
GenBankAP0149619e-65AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126179e-65CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692635.17e-72PREDICTED: probable WRKY transcription factor 62
TrEMBLA0A0E0A0Q30.0A0A0E0A0Q3_9ORYZ; Uncharacterized protein
STRINGOGLUM05G21510.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.14e-22WRKY DNA-binding protein 62