PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G21470.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 321aa    MW: 34059.8 Da    PI: 4.7065
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G21470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.79.6e-23123185258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT...EEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk...vveitYegeHnh 58 
                      +D + WrKYGqKe+k+s++pr YYrC+++   gC+++k+v++s++d +   v +itY geH +
  OGLUM05G21470.1 123 HDNFLWRKYGQKEIKNSKHPRLYYRCSYRddhGCTATKQVQQSEDDDTaspVYVITYFGEHFC 185
                      79**************************99999**********998763336799******76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-23116186IPR003657WRKY domain
PROSITE profilePS5081117.695117183IPR003657WRKY domain
SuperFamilySSF1182906.8E-22119186IPR003657WRKY domain
SMARTSM007745.0E-33122187IPR003657WRKY domain
PfamPF031064.9E-23124185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MVRATALAAT AGESSAASAS QLVAEGRRSA ARLHALLCRQ QAAAGSSSST LHGCPMALTE  60
QILCCFDRAI AALHGGAGAG CREDDDGHAA VRGGKCKPER GSAGARAAAS SKRIRVEKKA  120
TMHDNFLWRK YGQKEIKNSK HPRLYYRCSY RDDHGCTATK QVQQSEDDDT ASPVYVITYF  180
GEHFCGRVAD VGGPVVAGDD GEESEELMVI SFGSSAAAAA AATGGASAAY PWPCCGEDAK  240
NRGPSKTWSL PDWEEVPPLT ANVAEELIEE ESTPEPELMG LISSPDLEYS LLDLELGESS  300
FGIDGFINFD ELSVYSIDNA R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-18122185868OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1447379e-56AC144737.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0018K15, complete sequence.
GenBankAP0149619e-56AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126139e-56CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639266.13e-81probable WRKY transcription factor 38
TrEMBLA0A0E0A0P90.0A0A0E0A0P9_9ORYZ; Uncharacterized protein
STRINGOGLUM05G21470.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.15e-18WRKY DNA-binding protein 62