PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G20280.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 455aa    MW: 50467.8 Da    PI: 8.3993
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G20280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-1755101148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde+l +av  + g++Wk+Ia+ +   Rt+ qc +rwqk+l
  OGLUM05G20280.1  55 KGGWTPEEDEKLRKAVDIYNGKNWKKIAESFS-DRTEVQCLHRWQKVL 101
                      688*****************************.************986 PP
2Myb_DNA-binding30.58.2e-10107135129
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar 29 
                      +g+WT+eEd+ +++ vk++G++ W+ Iar
  OGLUM05G20280.1 107 KGPWTQEEDDVIINMVKKHGPKKWSVIAR 135
                      79*************************97 PP
3Myb_DNA-binding51.81.9e-16146189146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      + +WT eE+  l++a+ ++G++ W+ Ia+ ++ gRt++++k++w++
  OGLUM05G20280.1 146 KEAWTVEEERVLARAHCMYGNK-WAEIAKLLP-GRTDNSIKNHWNS 189
                      579*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.38250105IPR017930Myb domain
SuperFamilySSF466895.81E-1953115IPR009057Homeodomain-like
SMARTSM007175.8E-1554103IPR001005SANT/Myb domain
PfamPF002492.1E-1555101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2257113IPR009057Homeodomain-like
CDDcd001671.02E-1358101No hitNo description
PROSITE profilePS500907.991102135IPR017877Myb-like domain
SuperFamilySSF466891.76E-23104187IPR009057Homeodomain-like
SMARTSM007170.026106142IPR001005SANT/Myb domain
PfamPF002492.1E-7107135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-10114146IPR009057Homeodomain-like
PROSITE profilePS5129425.695141195IPR017930Myb domain
SMARTSM007171.3E-14145193IPR001005SANT/Myb domain
PfamPF002495.0E-15146189IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-22147195IPR009057Homeodomain-like
CDDcd001672.22E-11148191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MPAVKVEEEE EERNPVASSP SVSEGSAHAA ALASPTAADS IFGRRRKSGP VRRAKGGWTP  60
EEDEKLRKAV DIYNGKNWKK IAESFSDRTE VQCLHRWQKV LDPELIKGPW TQEEDDVIIN  120
MVKKHGPKKW SVIARWHNHL DPQIRKEAWT VEEERVLARA HCMYGNKWAE IAKLLPGRTD  180
NSIKNHWNSS LRKKIDDYNT RDILPVHPPV VGDGLKQLPK RPPADNHFDL NKEPIICSRD  240
RLGVVHSDPT SHQRASNLKD FKGCADYLSL GQPVTSCEAS AADDSAFDLA TQGMRMDSVH  300
DKGTGNNFVC GKVQGINFLG DKGLKINQIS DKMGCSRQAK REGEAAINGG GSSLQSEAHS  360
VGSLCYQIPK MEDIAPAQSP VFTANYVPEH SRNVMHSPNG YTTPPTHGKG SDQLSVESIL  420
RSAAEKFHET ASDVLKWERR PDASKFNVVT LPKGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-58541955159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-58541955159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067560.0AK106756.1 Oryza sativa Japonica Group cDNA clone:002-115-D07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637435.10.0transcription factor MYB3R-2-like
SwissprotQ0JHU71e-137MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A0E0A0980.0A0A0E0A098_9ORYZ; Uncharacterized protein
STRINGOGLUM05G20280.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.22e-82myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]