PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G19350.2

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 554aa MW: 61230.4 Da PI: 9.06

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G19350.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.7	8e-11	244	273	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ OGLUM05G19350.2 244 AKTERRLAQNREAARKSRLRKKAYVQQLET 273 699*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-6	241	317	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.381	243	287	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.2E-7	244	274	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.8E-7	245	274	No hit	No description
SuperFamily	SSF57959	1.61E-6	245	288	No hit	No description
PROSITE pattern	PS00036	0	248	263	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.5E-29	326	400	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence Send to blast
MGLRVAYWPK GLYLNASSPA TRIVSRSSRP SAAVAGGRRR PLPLKKGGNN TLNIRPLPPL 60 AATESTARLL SSTAGGVRLH RSHGKSRIGL QYKSQRVEAK KSELQPAAAA YFGELEKALI 120 HGTSAGAGVD HGMIQSDAYT EPAGYLAARP PTLEIFPSWP MSHLQEPYSN TMSQAELVSP 180 ASMRSDSGQE QQQQEVLMVT IDDYNYKQGL GAAIATAPSF QQHAGGLDMR KHGSTRKDGK 240 LLDAKTERRL AQNREAARKS RLRKKAYVQQ LETSRIRLQQ IEQELQRARS QGLFPGGCSA 300 PGDMSSGAVM FDMEYTRWID DDSKCMAELQ GALQAQLPDG NLGAIVEECM RHYDELFHLR 360 AVLASSDVFH LMTGMWAAPA ERCFLWMAGF RPSEILKMLI PQLDPLTEQQ LMGMCSLQQS 420 SEQTEEALAQ GLHQLHQSLA DAVGGGPLND GADVANYTGL MALALGRLEN LESFYRQADN 480 LRQETLHHMR RILTTRQTAR CFLSIGEYNR RLRALSSLWA SRPRENFIAT ENVSPTGTEF 540 QVIQQSQQNQ FSGF

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence Send to blast

MGLRVAYWPK GLYLNASSPA TRIVSRSSRP SAAVAGGRRR PLPLKKGGNN TLNIRPLPPL  60
AATESTARLL SSTAGGVRLH RSHGKSRIGL QYKSQRVEAK KSELQPAAAA YFGELEKALI  120
HGTSAGAGVD HGMIQSDAYT EPAGYLAARP PTLEIFPSWP MSHLQEPYSN TMSQAELVSP  180
ASMRSDSGQE QQQQEVLMVT IDDYNYKQGL GAAIATAPSF QQHAGGLDMR KHGSTRKDGK  240
LLDAKTERRL AQNREAARKS RLRKKAYVQQ LETSRIRLQQ IEQELQRARS QGLFPGGCSA  300
PGDMSSGAVM FDMEYTRWID DDSKCMAELQ GALQAQLPDG NLGAIVEECM RHYDELFHLR  360
AVLASSDVFH LMTGMWAAPA ERCFLWMAGF RPSEILKMLI PQLDPLTEQQ LMGMCSLQQS  420
SEQTEEALAQ GLHQLHQSLA DAVGGGPLND GADVANYTGL MALALGRLEN LESFYRQADN  480
LRQETLHHMR RILTTRQTAR CFLSIGEYNR RLRALSSLWA SRPRENFIAT ENVSPTGTEF  540
QVIQQSQQNQ FSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109520	0.0	AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639063.2	0.0	transcription factor TGAL5 isoform X7
Refseq	XP_025881194.1	0.0	transcription factor TGAL5 isoform X2
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A0D9ZZW3	0.0	A0A0D9ZZW3_9ORYZ; Uncharacterized protein
STRING	OGLUM05G19350.3	0.0	(Oryza glumipatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-137	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]