PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM05G19250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 260aa MW: 28905.7 Da PI: 6.2938 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 112.6 | 4.2e-35 | 4 | 126 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppG+rF Pt+eelv++yL++k++g + ++e+vi+ +d ++ +++ + w++F++r++++a+g r++r+t sgyWka g+ v OGLUM05G19250.1 4 LPPGYRFYPTEEELVCFYLRHKLDGGRrvPDIERVIPVADAHQ---GA----WTGDGEPWFYFCPRQEREARGGRPSRTTPSGYWKAAGTPGWV 90 79***********************995444444455544443...33....3457789*********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s++g+ +g+kkt+vfy+grap g kt+W m+eyr+ OGLUM05G19250.1 91 YSSDGRPIGTKKTMVFYRGRAPAGAKTKWKMNEYRA 126 **********************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-42 | 3 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.068 | 4 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-24 | 5 | 125 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MGELPPGYRF YPTEEELVCF YLRHKLDGGR RVPDIERVIP VADAHQGAWT GDGEPWFYFC 60 PRQEREARGG RPSRTTPSGY WKAAGTPGWV YSSDGRPIGT KKTMVFYRGR APAGAKTKWK 120 MNEYRAFEED DDNAAAAAPA QNHYLQTRSD FSLCRLYTRS GCPRQFDRRP PSSSVASGGG 180 ENRAAPSSTA AAFANEDAAE SSGKSQKRKR SAPDDRLDST SSSDDNGGCD GSMLQQRQRG 240 TDEELVECSM TDWADLLDWF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-27 | 4 | 159 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-27 | 4 | 159 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-27 | 4 | 159 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-27 | 4 | 159 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-27 | 4 | 159 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-27 | 4 | 159 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063703 | 0.0 | AK063703.1 Oryza sativa Japonica Group cDNA clone:001-119-G11, full insert sequence. | |||
GenBank | JN185442 | 0.0 | JN185442.1 Oryza sativa Japonica Group NAC transcription factor 12 (NAC12) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638341.1 | 1e-158 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 4e-58 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A0D9ZZV2 | 0.0 | A0A0D9ZZV2_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM05G19250.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 9e-59 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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