PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G18510.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 282aa    MW: 30464.6 Da    PI: 8.8506
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G18510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ +++ +G g+W++ ++  g+ R++k+c++rw +yl
  OGLUM05G18510.1 14 KGAWTKEEDQRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding47.63.9e-1567133147
                      TSSS-HHHHHHHHHHHHHTTTT.....................-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....................tWktIartmgkgRtlkqcksrwqky 47 
                      rg++T +Edel+++++ +lG++                      W++Ia  ++ gRt++++k++w+++
  OGLUM05G18510.1  67 RGNFTDDEDELIIRLHSLLGNKsvslppspappppidgafinsLWSLIAGQLP-GRTDNEIKNYWNTH 133
                      89***************************************************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-23564IPR009057Homeodomain-like
PROSITE profilePS5129423.411965IPR017930Myb domain
SMARTSM007176.7E-141363IPR001005SANT/Myb domain
PfamPF002491.3E-151461IPR001005SANT/Myb domain
SuperFamilySSF466892.57E-221465IPR009057Homeodomain-like
CDDcd001679.03E-121661No hitNo description
Gene3DG3DSA:1.10.10.608.1E-2465138IPR009057Homeodomain-like
PROSITE profilePS5129413.03366138IPR017930Myb domain
SMARTSM007178.7E-1366136IPR001005SANT/Myb domain
PfamPF002491.4E-1267133IPR001005SANT/Myb domain
CDDcd001671.48E-969134No hitNo description
SuperFamilySSF466892.57E-22107135IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY  60
LRPDLKRGNF TDDEDELIIR LHSLLGNKSV SLPPSPAPPP PIDGAFINSL WSLIAGQLPG  120
RTDNEIKNYW NTHIKRKLLA RGIDPQTHRP LLSGGDGIAA SNKAAPPTPH PISVPAKAAA  180
AAIFAVAKPP PPPRPVDSSD DGGRSSSGTT STGEPRCPDL NLELSVGPTP SSPPAETPTS  240
ARPVCLCYHL GFRGGEACSC QADSKGPHEF RYFRPLEQGQ YI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141387108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1306000.0AC130600.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0048I21, complete sequence.
GenBankAK1040530.0AK104053.1 Oryza sativa Japonica Group cDNA clone:001-023-G03, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankEU8372460.0EU837246.1 Oryza sativa Japonica Group clone KCS051A09 myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638107.11e-164transcription factor MYB8
SwissprotP813931e-87MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A0D9ZZJ60.0A0A0D9ZZJ6_9ORYZ; Uncharacterized protein
STRINGOGLUM05G18510.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-81myb domain protein 6
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]