PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM05G17360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 191aa MW: 19100.3 Da PI: 9.0051 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 34.7 | 3.9e-11 | 1 | 23 | 33 | 55 |
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 ++lm+v+gLt+e+v+SHLQkYRl OGLUM05G17360.1 1 MQLMSVDGLTRENVASHLQKYRL 23 79********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-11 | 1 | 28 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.6E-8 | 2 | 23 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 3.4E-5 | 2 | 27 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MQLMSVDGLT RENVASHLQK YRLYLKRMQG VGNGGGGGGG GGAGAGGSHS SGSGTDAATE 60 HLFATGPVPF LPPGRAPAGG DPYPPFAPMG GHHHHPPQIG HFHHHPAARP LGHYGSGPGA 120 GFDHGFLSRA VAGGGPPVGP PGMHHRMVGP AAGMAMMAPS PFAEELELGS RGGGGGGGRR 180 ELTLFPTTGD H |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 178 | RGGGGGGGR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640251.1 | 1e-126 | transcription factor MYBC1 | ||||
TrEMBL | A0A0E0HEF2 | 1e-125 | A0A0E0HEF2_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA05G17050.1 | 1e-126 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1620 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10760.1 | 2e-16 | G2-like family protein |