PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G15270.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 797aa    MW: 81598.2 Da    PI: 8.036
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G15270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS224.64.7e-6937475235374
             GRAS  35 gdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege.ervHiiDfdis.qGlQWp 126
                      g++ qRla+ f+eALa r    +++++++l+ +++++     + aa++ f  ++P+++++  +aN  I e +e e   vH++D++ +    QW+
  OGLUM05G15270.1 374 GRSAQRLASAFAEALALRFILPCDGVCRSLHLTQAPP--PPAVSAARQGFRAMCPFVRLAAAAANLSIAEVMEAErGVVHVVDLGGGvDANQWV 465
                      6799**************************9999986..6677789999**************************7788*****9763699*** PP

             GRAS 127 aLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.......eleeLrvkpgEalaVnlvlqlhr 212
                       L +  a+Rp+g p  lR+T+v++    s++ l++ +   a  A++l+++++f+++  +++e+l         ++L v pg  laV   lq+hr
  OGLUM05G15270.1 466 ELVRLVAARPGGRPgLLRLTVVNE----SEDFLSAAAAYVAAEAQRLDLSLQFHPV-LSSIEELsatatgsIGSRLVVIPGQPLAVVANLQIHR 554
                      **********888879********....9**************************5.66666662222222235678888************** PP

             GRAS 213 ll........................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres.. 279
                      ll                           ++++ + d++L+++++l+Pk+vv++e+eadhn +++ +r+ +al+yy+alfd++ +++ p+++  
  OGLUM05G15270.1 555 LLafpddvdgvasrrpaaeqsgsskhMMMTTTKTKADALLRAIRDLNPKLVVLTENEADHNVAELGARVWNALNYYAALFDAVeASSTPPAAvp 648
                      *********************9998633333333679**********************************************55556666689 PP

             GRAS 280 .eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg.......yrveeesgslv.lgWk 363
                       +er+ vEr +lg+ei+++v  eg+ rrerhetl++W er+ +aGF+pv+     a++ ++l ++++   g        r  +  g++  ++W 
  OGLUM05G15270.1 649 pHERACVERWVLGEEIKDIVVREGTGRRERHETLGRWAERMVAAGFSPVTAARALAST-ETLAQQMAaAGGggagagvLRAAHGGGCFPvICWC 741
                      9************************************************987655555.5555555423334555544444455777757**** PP

             GRAS 364 drpLvsvSaWr 374
                      d p++svS W+
  OGLUM05G15270.1 742 DVPVFSVSTWT 752
                      **********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.259305724IPR005202Transcription factor GRAS
PfamPF035141.6E-66374752IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 797 aa     Download sequence    Send to blast
MVAEILRVAL GGGGGAGERL PAAGEDSAAA TNTGKRPLVR SSLAAMVVVV AGIQPDAFAL  60
GWPAEYPAGD RERDLLMVRF LRSIAAFLAD GTCQMQVNDG LSCVVDLAGG VGGGRSEQRA  120
ASVCLRRGAR AVVHPAMRRS GPLGGSLRRR HRCGCRRRLV LVVLVHRAHA TAATVCRRRA  180
RRRQCGGSDE GSGKVTMAAE IPRLALGGGG GGGEQLPGPP MAAVEEDLPA ATSTRKRLVG  240
TSGNLTMAAE IPRLALGGGG GGAGGERLPA AGEDSAAAAT NAGKRPVVGL GFGSSLAAMA  300
AAAAAGIQPD AFALGGPAEY PAGDAERDVL MVSFLRSIAA FLADGTCQMQ VNDGLSCVVD  360
LAGGDADGDG VGGGRSAQRL ASAFAEALAL RFILPCDGVC RSLHLTQAPP PPAVSAARQG  420
FRAMCPFVRL AAAAANLSIA EVMEAERGVV HVVDLGGGVD ANQWVELVRL VAARPGGRPG  480
LLRLTVVNES EDFLSAAAAY VAAEAQRLDL SLQFHPVLSS IEELSATATG SIGSRLVVIP  540
GQPLAVVANL QIHRLLAFPD DVDGVASRRP AAEQSGSSKH MMMTTTKTKA DALLRAIRDL  600
NPKLVVLTEN EADHNVAELG ARVWNALNYY AALFDAVEAS STPPAAVPPH ERACVERWVL  660
GEEIKDIVVR EGTGRRERHE TLGRWAERMV AAGFSPVTAA RALASTETLA QQMAAAGGGG  720
AGAGVLRAAH GGGCFPVICW CDVPVFSVST WTARRVLVPA PPLWPPAAAG GAGPSGSGYG  780
GDGPSTASSL AAMWWVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-2337475453381Protein SCARECROW
5b3h_A2e-2337475452380Protein SCARECROW
5b3h_D2e-2337475452380Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209870.0AC120987.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0007A06, complete sequence.
GenBankAC1362180.0AC136218.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0039A21, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881539.10.0scarecrow-like protein 3
TrEMBLA0A0D9ZYG20.0A0A0D9ZYG2_9ORYZ; Uncharacterized protein
STRINGOGLUM05G15270.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170631012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-33scarecrow-like 3