PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM05G13290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 419aa MW: 45148.2 Da PI: 4.5349 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.6e-18 | 133 | 183 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+WvAeIr+p + r r +lg+f tae Aa a+++a+++++g OGLUM05G13290.1 133 CDFRGVRQRT-WGKWVAEIREP---N-RqSRLWLGTFPTAEAAACAYDEAARAMYG 183 689****999.**********8...3.35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.7E-12 | 133 | 183 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.41E-17 | 133 | 190 | No hit | No description |
PROSITE profile | PS51032 | 21.443 | 134 | 191 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-34 | 134 | 197 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-9 | 135 | 146 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-20 | 135 | 191 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-30 | 135 | 191 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-9 | 157 | 173 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MTVDQRTTAK AIMPPVEMPP VQPGRKCGGE ESTGNLDSVQ PIAGALPCNE HALLAQQTPK 60 GDAPSVGSKI WKKRPRRSRD GPTSVAETIK RWAELNNQQE LDPQGPKKAR KAPAKGSKKG 120 CMKGKGGPEN TRCDFRGVRQ RTWGKWVAEI REPNRQSRLW LGTFPTAEAA ACAYDEAARA 180 MYGPMARTNF GQHHAPAASV QVAQAAVKCA LPGGGLTASK SRTSTQGASA DVQDVLTGGL 240 SACESTTTTI NNQSDVVSTL HKPEEVSEIS SPLRAPPAVL EDGSNEDKAE SVTYDENIVS 300 QQRAPPEAEA SNGRGEEVFE PLEPIASLPE DQGDYCFDID EMLRMMEADP TNEGLWKGDK 360 DGSDAILELG QDEPFYYEGV DPGMLDNLLR SDEPAWLSAD PAMFISGGFE DDSQFFEGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-13 | 135 | 190 | 6 | 62 | ATERF1 |
3gcc_A | 2e-13 | 135 | 190 | 6 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF915845 | 0.0 | JF915845.1 Oryza sativa dehydration responsive element binding protein 2B isoform c (DREB2B) mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881150.1 | 0.0 | dehydration-responsive element-binding protein 2B isoform X3 | ||||
Swissprot | Q5W6R4 | 0.0 | DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B | ||||
TrEMBL | A0A0D9ZXR3 | 0.0 | A0A0D9ZXR3_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM05G13290.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11515 | 30 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.2 | 3e-29 | DRE-binding protein 2A |
Publications ? help Back to Top | |||
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