PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G13190.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 490aa    MW: 51246.5 Da    PI: 7.8203
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G13190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.52.8e-33192250260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      +DgynWrKYGqK+vkgse+prsYY+Ct++gC++kkkvers  d+++++i+Y+g Hnh+k
  OGLUM05G13190.1 192 EDGYNWRKYGQKQVKGSENPRSYYKCTYNGCSMKKKVERSLADGRITQIVYKGAHNHPK 250
                      8********************************************************85 PP
2WRKY105.72.3e-33354412159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDg++WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d+++v++tYeg+Hnh+
  OGLUM05G13190.1 354 LDDGFRWRKYGQKVVKGNPNPRSYYKCTTVGCPVRKHVERASHDTRAVITTYEGKHNHD 412
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.451186251IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.7E-29189251IPR003657WRKY domain
SuperFamilySSF1182906.28E-26190251IPR003657WRKY domain
SMARTSM007742.9E-36191250IPR003657WRKY domain
PfamPF031062.6E-25192249IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-36339414IPR003657WRKY domain
SuperFamilySSF1182903.27E-29346414IPR003657WRKY domain
PROSITE profilePS5081138.124349414IPR003657WRKY domain
SMARTSM007743.6E-39354413IPR003657WRKY domain
PfamPF031061.4E-25355412IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MASSTGGLDH GFTFTPPPFI TSFTELLSGG GGDLLGAGGE ERSPRGFSRG GARVGGGVPK  60
FKSAQPPSLP LSPPPVSPSS YFAIPPGLSP TELLDSPVLL SSSHILASPT TGAIPAQRYN  120
WKASADLIAS QQDDSRGDFS FHTNSDAMAA QPASFPSFKE QEQEQQVVES SKNGGAAASS  180
NKSGGGGNNK LEDGYNWRKY GQKQVKGSEN PRSYYKCTYN GCSMKKKVER SLADGRITQI  240
VYKGAHNHPK PLSTRRNASS SCATAAACAD DLAAPGAGAD QYSAATPENS SVTFGDDEAD  300
NASHRSEGDE PEAKRWKEDA DNEGSSGGMG GGAGGKPVRE PRLVVQTLSD IDILDDGFRW  360
RKYGQKVVKG NPNPRSYYKC TTVGCPVRKH VERASHDTRA VITTYEGKHN HDVPVGRGGG  420
GGRAPAPAPP SSGAIRPPAV AAAQQGPYTL EMLPNPAGLY GGYGAGAGGA AFPRTKDEPR  480
DDLFVESLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-35191414877Probable WRKY transcription factor 4
2lex_A7e-35191414877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1904360.0AB190436.1 Oryza sativa Japonica Group OsWRKY53 mRNA for transcription factor OsWRKY53, complete cds.
GenBankAY6769290.0AY676929.1 Oryza sativa (indica cultivar-group) transcription factor WRKY53 (WRKY53) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640378.10.0probable WRKY transcription factor 26 isoform X2
SwissprotQ6B6R41e-114WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A0D9ZXP80.0A0A0D9ZXP8_9ORYZ; Uncharacterized protein
STRINGOGLUM05G13190.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.12e-91WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]