PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G12590.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 567aa    MW: 60410.6 Da    PI: 3.8077
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G12590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.71.3e-2471461128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atgkdke 91 
                      l pG++F+P+d++lv +yL ++++g++l+l+ vi e+d +++ Pw+L +  +++ +e +fF++++ k+ +gkr++r +   g+W+  +t  d e
  OGLUM05G12590.1   7 LLPGLKFDPSDHDLVGRYLLRRLQGQPLPLDGVILEADPLSAPPWKLLAD-HGRGDEAFFFAEAHAKNGKGKRQKRtVEGGGFWQgqKTCVDGE 99 
                      579***************************999**************743.456789*******************555599**9334444555 PP

              NAM  92 vlsk.........kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                       l+          +         + k +L f+  + ++g ++ Wvmhey++
  OGLUM05G12590.1 100 RLCVpddgdgsggG--GggleiAWRKYVLSFFA-NGERG-SSGWVMHEYAV 146
                      44445666655550..055565899999****4.44444.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-304165IPR003441NAC domain
PROSITE profilePS5100527.3567165IPR003441NAC domain
PfamPF023659.7E-159145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MAAADGLLPG LKFDPSDHDL VGRYLLRRLQ GQPLPLDGVI LEADPLSAPP WKLLADHGRG  60
DEAFFFAEAH AKNGKGKRQK RTVEGGGFWQ GQKTCVDGER LCVPDDGDGS GGGGGGLEIA  120
WRKYVLSFFA NGERGSSGWV MHEYAVTAPD GLASSQLRLY RVRFSGYGKK RKREPQCPGA  180
HGDDDGELQR APPPRSMAET ALLEERGPLP HPVLGPASVV DQCTDQGSSG VIDDSSLVFR  240
DLPDLIDLPV AEEADASHGA ETALLNEHLP LPPPQLFVPP TAVPLDLADD SDGADQNSYG  300
MMGDDQLLLP DLPGTINDDM PDLFVSQAEE ASAVPAISYH SSGFMGNEVA ALSDFELPES  360
YSSSDAMDGE ALALSNYEFP ESFEEDLSCI DFATANASSL GFPMDGYPMD ELFDDMPDQG  420
SSGAMDDSSV VFRDLPGLIN LPPAEEADAI GDAETALLRD LADDSNGTDR NSYGVMGDDQ  480
DRLLLPEIPR RIDMPDLFVS QAEEAGLGGG AALDSSSGAM DGEALALSDF EFPESVEEVL  540
SCMDFSTVDM SCLDVPIDEL LDDLPAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1343460.0AC134346.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0018A03, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638590.10.0uncharacterized protein LOC107275325
TrEMBLA0A0D9ZXH00.0A0A0D9ZXH0_9ORYZ; Uncharacterized protein
STRINGOGLUM05G12590.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137