PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G06890.2

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MIKC_MADS

Protein Properties

Length: 212aa MW: 23696.3 Da PI: 4.9428

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G06890.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.1	8.7e-27	36	84	3	51
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ie++ rqvtf+kR ng+lKKA+ELS LCdaeva+i+fss+g+lyeys+ OGLUM05G06890.2 36 IEDTADRQVTFCKRCNGLLKKAYELSMLCDAEVALIVFSSRGRLYEYSN 84 99*********************************************95 PP
2	K-box	20.4	2.2e-08	102	135	4	37
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRh 37 s+ + ++e +a+++qqe+akLk+ i Lq+++R OGLUM05G06890.2 102 SNASTVAEINAQHYQQEAAKLKQHITYLQNSNRT 135 34444999*********************99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.3E-23	26	85	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.964	26	86	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-22	28	48	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.8E-24	36	82	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.4E-25	36	99	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.34E-35	36	100	No hit	No description
PRINTS	PR00404	1.2E-22	48	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-22	63	84	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MHIYKEQEAE PSTGLMMPEP APAASPGSGS SDGSGIEDTA DRQVTFCKRC NGLLKKAYEL 60 SMLCDAEVAL IVFSSRGRLY EYSNNSVEET IERYKKANSD TSNASTVAEI NAQHYQQEAA 120 KLKQHITYLQ NSNRTNICET ELQNDNMYSK SEVAESERGL QTVNMMGSAS TSEYVQNMIH 180 YDPGNFLQFN IMQQLASLSI ILNRRTERPH SS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-15	27	94	2	69	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-15	27	94	2	69	Myocyte-specific enhancer factor 2B
1tqe_R	1e-15	27	94	2	69	Myocyte-specific enhancer factor 2B
1tqe_S	1e-15	27	94	2	69	Myocyte-specific enhancer factor 2B
6c9l_A	1e-15	27	94	2	69	Myocyte-specific enhancer factor 2B
6c9l_B	1e-15	27	94	2	69	Myocyte-specific enhancer factor 2B
6c9l_C	1e-15	27	94	2	69	Myocyte-specific enhancer factor 2B
6c9l_D	1e-15	27	94	2	69	Myocyte-specific enhancer factor 2B
6c9l_E	1e-15	27	94	2	69	Myocyte-specific enhancer factor 2B
6c9l_F	1e-15	27	94	2	69	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269\|PubMed:16326928}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB232157	1e-127	AB232157.1 Oryza sativa Japonica Group mRNA for transcription factor OsMADS58, complete cds.
GenBank	AK111723	1e-127	AK111723.1 Oryza sativa Japonica Group cDNA clone:J023027E19, full insert sequence.
GenBank	FJ750942	1e-127	FJ750942.1 Oryza sativa clone KCS268A08 MADS-box transcription factor 58 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638060.1	1e-104	MADS-box transcription factor 58 isoform X1
Swissprot	Q2V0P1	1e-106	MAD58_ORYSJ; MADS-box transcription factor 58
TrEMBL	A0A0D9ZVH8	1e-157	A0A0D9ZVH8_9ORYZ; Uncharacterized protein
STRING	OGLUM05G06890.1	1e-135	(Oryza glumipatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	2e-53	MIKC_MADS family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Li H, et al. Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate. Plant Cell, 2011. 23(7): p. 2536-52 [PMID:21784949] Sato H,Yoshida K,Mitsuda N,Ohme-Takagi M,Takamizo T Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58. Plant Sci., 2012. 183: p. 183-9 [PMID:22195592] Yun D, et al. OsMADS16 genetically interacts with OsMADS3 and OsMADS58 in specifying floral patterning in rice. Mol Plant, 2013. 6(3): p. 743-56 [PMID:23300256] Yan D, et al. Curved chimeric palea 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development. Plant J., 2015. 82(1): p. 12-24 [PMID:25647350] Zheng M, et al. DEFORMED FLORAL ORGAN1 (DFO1) regulates floral organ identity by epigenetically repressing the expression of OsMADS58 in rice (Oryza sativa). New Phytol., 2015. 206(4): p. 1476-90 [PMID:25675970] Chen R, et al. A Gene Expression Profiling of Early Rice Stamen Development that Reveals Inhibition of Photosynthetic Genes by OsMADS58. Mol Plant, 2015. 8(7): p. 1069-89 [PMID:25684654] Hu Y, et al. Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development. Mol Plant, 2015. 8(9): p. 1366-84 [PMID:25917758]