PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G06170.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 169aa    MW: 19142.4 Da    PI: 10.9868
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G06170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.34.1e-11591999
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-..EEEEEE-SS.SEE..EEEEE-S CS
               B3  9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD..fvvFkldgr.sefelvvkvfrk 99
                      + +++ l +p   +++  +k+  ++tl+l+  +g + +vk+     +++ ++t GWkeF ++ gLk g+  +vvF+   + s+ +l+v +f+k
  OGLUM05G06170.1  5 KTASQDYLPIPVAVTKASRLKH--GRTLKLMIAHGLKIRVKV--AEARDKLYMTIGWKEFIQETGLKMGEskSVVFR---TlSKSRLNVIIFNK 91
                     5667788889999998888884..569***************..***********************7763379999...44677779999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.068192IPR003340B3 DNA binding domain
PfamPF023626.1E-9391IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-14492IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-13892IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MVKIKTASQD YLPIPVAVTK ASRLKHGRTL KLMIAHGLKI RVKVAEARDK LYMTIGWKEF  60
IQETGLKMGE SKSVVFRTLS KSRLNVIIFN KEGYSICPIP DKAAKALINN QSSSAPSFST  120
KSTAPRHPSS TNVEGRVHMT KLNRTKPTHP TQVQAPYWIN FYRSKYFTY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ84YL39e-90Y7282_ORYSJ; Putative B3 domain-containing protein LOC_Os07g12820
TrEMBLA0A0D9ZV981e-122A0A0D9ZV98_9ORYZ; Uncharacterized protein
STRINGOGLUM05G06170.11e-123(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1825266