PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G02570.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 503aa    MW: 52335.4 Da    PI: 7.3338
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G02570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.4e-30250308259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a +Cpv+k+v+r+aed++++++tYeg+H h+
  OGLUM05G02570.1 250 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAsQCPVRKQVQRCAEDKSILITTYEGTHSHP 308
                      7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-33234310IPR003657WRKY domain
SuperFamilySSF1182901.83E-27242310IPR003657WRKY domain
PROSITE profilePS5081128.185244310IPR003657WRKY domain
SMARTSM007744.3E-35249309IPR003657WRKY domain
PfamPF031061.7E-26251308IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MEMMVQKQRH EEGEEERGGL CAREIKELDF FSAAGAGAGR RDDDDVLRAD GISSSHAGFM  60
VSTALDLLTA VNDGDHHEEK KGQSNIHKSK QMDAAAATTV EGELRQAGEE NRWLRRRLEE  120
LTSSYGALYH QLVQAQQLHT KHQQQAPIAG VQLLDALAAA SPASHRRRAA AAVDGDRTAD  180
SDGGEGDENV SPSLGSKRPA AAATLTRLTP ESGSGGENNG GGEQAPAAEM APCRKARVSV  240
RARSEAPMIS DGCQWRKYGQ KMAKGNPCPR AYYRCTMASQ CPVRKQVQRC AEDKSILITT  300
YEGTHSHPLP PAAAAMAKTT SAAAAMLLSG PAVSRDGLFA AHHHVVAPPP FFHHPYAGST  360
MATLSASAPF PTITLDLTQP PPTTTTTAAA AMLQLHRPHA FSSLPFSMYG AGGGSHRPPV  420
VLPPPSSVVE TMTAAITRDP NFTTAVAAAL SSIMAGGGAQ ARTPPRGGSD AAGDINGGGG  480
ADHATAGARA AAAATQPCGT SPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-21236312176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638124.10.0probable WRKY transcription factor 47 isoform X1
TrEMBLA0A0D9ZTX50.0A0A0D9ZTX5_9ORYZ; Uncharacterized protein
STRINGOGLUM05G02570.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-44WRKY family protein