PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM05G02160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 302aa MW: 32528.4 Da PI: 5.2561 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 1.9e-09 | 235 | 268 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++e++ +LA+ +gL+ +q+ +WF N+R ++ OGLUM05G02160.1 235 WPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRH 268 59*****************************885 PP | |||||||
2 | ELK | 33.2 | 1.2e-11 | 188 | 209 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsg+L+ L++EF+ OGLUM05G02160.1 188 ELKEMLLKKYSGCLSRLRSEFL 209 9********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.9E-18 | 53 | 97 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.6E-19 | 55 | 94 | IPR005540 | KNOX1 |
SMART | SM01256 | 4.0E-27 | 102 | 153 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.7E-23 | 106 | 152 | IPR005541 | KNOX2 |
SMART | SM01188 | 3.6E-6 | 188 | 209 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.423 | 188 | 208 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.4E-8 | 188 | 209 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.681 | 208 | 271 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-14 | 210 | 275 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.13E-20 | 210 | 279 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-27 | 213 | 273 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.22E-13 | 220 | 272 | No hit | No description |
Pfam | PF05920 | 5.0E-17 | 228 | 267 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 246 | 269 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 302 aa Download sequence Send to blast |
MEDLYSIHPG ISRGGGGGGG GAASEASGVA GGGSSPPHPP PPATTAAAAD LTELMKAQIA 60 GHPSYPSLLS AYIECRKVGA PPEVTTLLEE IGREGRGGGA TAGGEIGLDP ELDEFMETYC 120 RVLERYKEEL TRPFDEAASF LTGIHTQLAS LCGGAPPPTD NSEDEPCSGD ADAADFGQEH 180 SSRLADHELK EMLLKKYSGC LSRLRSEFLK KRKKGKLPKD ARSALMDWWN THYRWPYPTE 240 EDKVRLAAMT GLDPKQINNW FINQRKRHWK PSEDMRFALM EGVTGGSSSG TTLYFDTGTI 300 GP |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 203 | 212 | LRSEFLKKRK |
2 | 209 | 213 | KKRKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}. | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10488233}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB028885 | 0.0 | AB028885.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH71, complete cds. | |||
GenBank | AF050180 | 0.0 | AF050180.1 Oryza sativa strain Indica IR58 KNOX class homeodomain protein (Oskn2) mRNA, complete cds. | |||
GenBank | AK111878 | 0.0 | AK111878.1 Oryza sativa Japonica Group cDNA clone:J033046I12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637898.1 | 1e-166 | homeobox protein knotted-1-like 10 | ||||
Swissprot | A2Y007 | 1e-167 | KNOSA_ORYSI; Homeobox protein knotted-1-like 10 | ||||
Swissprot | Q7GDL5 | 1e-167 | KNOSA_ORYSJ; Homeobox protein knotted-1-like 10 | ||||
TrEMBL | A0A0D9ZTS1 | 0.0 | A0A0D9ZTS1_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI05G02170.2 | 1e-173 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G23380.1 | 2e-74 | KNOTTED1-like homeobox gene 6 |