PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G00930.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 352aa MW: 36399.6 Da PI: 8.5766

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G00930.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.2	3.2e-37	100	158	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e lkcprCdstntkfCy+nnyslsqPr+fC+aCrryWt+GGalrnvPvGgg r++ k+ OGLUM05G00930.1 100 EPGLKCPRCDSTNTKFCYFNNYSLSQPRHFCRACRRYWTRGGALRNVPVGGGYRRHAKR 158 56789************************************************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-39	83	157	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.3E-32	103	157	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.789	103	157	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	105	141	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009640	Biological Process	photomorphogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MIFPPAFLDS SSWNDNNNNN HNQQQQQQHA HGHHQHHQVA AGCGGGGGGG GDGNSHELLQ 60 QQSMIPGTLA DGGGGGGAVG PAKPMSMSER ARLARIPLPE PGLKCPRCDS TNTKFCYFNN 120 YSLSQPRHFC RACRRYWTRG GALRNVPVGG GYRRHAKRAK PKPASAAGSA SAATTTAGST 180 PAGSTTTTTS STCATPNAPA LPAMLGGNLS ILPPLLRLAD FDAMSLGSTF SGMAAAAGKP 240 PPVDAAGCYS VGAATGLEQW RLQQMQSFPF FHAMDHQAAM AAPPPAMAMP GMFQLGLDGD 300 GHGGGGGEDG GELHHAMPSS KREGYPRGMY GDHHLAGGYT SYSSATTGNH LL

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MIFPPAFLDS SSWNDNNNNN HNQQQQQQHA HGHHQHHQVA AGCGGGGGGG GDGNSHELLQ  60
QQSMIPGTLA DGGGGGGAVG PAKPMSMSER ARLARIPLPE PGLKCPRCDS TNTKFCYFNN  120
YSLSQPRHFC RACRRYWTRG GALRNVPVGG GYRRHAKRAK PKPASAAGSA SAATTTAGST  180
PAGSTTTTTS STCATPNAPA LPAMLGGNLS ILPPLLRLAD FDAMSLGSTF SGMAAAAGKP  240
PPVDAAGCYS VGAATGLEQW RLQQMQSFPF FHAMDHQAAM AAPPPAMAMP GMFQLGLDGD  300
GHGGGGGEDG GELHHAMPSS KREGYPRGMY GDHHLAGGYT SYSSATTGNH LL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00407	DAP	Transfer from AT3G55370	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108933	0.0	AK108933.1 Oryza sativa Japonica Group cDNA clone:002-153-A09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638255.1	1e-166	dof zinc finger protein DOF3.6 isoform X1
TrEMBL	A0A0D9ZTD2	0.0	A0A0D9ZTD2_9ORYZ; Uncharacterized protein
STRING	OGLUM05G00930.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	2e-45	OBF-binding protein 3