PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G29490.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 282aa    MW: 29176.4 Da    PI: 6.1009
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G29490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.99.6e-13109153347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
  OGLUM04G29490.1 109 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 153
                      6*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.56150IPR017884SANT domain
SMARTSM0071726248IPR001005SANT/Myb domain
SuperFamilySSF466891.29E-5352IPR009057Homeodomain-like
PROSITE profilePS5129416.605102158IPR017930Myb domain
SuperFamilySSF466891.79E-16104159IPR009057Homeodomain-like
SMARTSM007179.3E-11106156IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.5E-17106156IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.9E-11109152IPR009057Homeodomain-like
CDDcd001672.63E-10109154No hitNo description
PfamPF002493.1E-11109153IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEKAFENALA TVGDDEEEGD GLWEKLAEAV EGKTADEVRR HYELLVEDVD GIEAGRVPLL  60
VYAGDGGVEE GSAGGGKKGG GGGGGGGGGG HGEKGSAKSA EQERRKGIAW TEDEHRLFLL  120
GLEKYGKGDW RSISRNFVIS RTPTQVASHA QKYFIRLNSM NRERRRSSIH DITSVNNGDT  180
SAAQGPITGQ PNGPSANPGK SSKQSPQPAN APPGVDAYGT TIGQPVGGPL VSAVGTPVTL  240
PVPAVPHIAY GMHAPVPGAV VPGAPVNMPP MPYPMPPPTS HG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17482GGKKGGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0686230.0AK068623.1 Oryza sativa Japonica Group cDNA clone:J013153N23, full insert sequence.
GenBankAK1061660.0AK106166.1 Oryza sativa Japonica Group cDNA clone:001-208-B07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636999.10.0transcription factor SRM1
SwissprotQ9FNN61e-96SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0D9ZSF80.0A0A0D9ZSF8_9ORYZ; Uncharacterized protein
STRINGOGLUM04G29490.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63763854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-76MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]