PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM04G26010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 838aa MW: 91019.1 Da PI: 6.1371 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.2 | 1.9e-20 | 133 | 189 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k+ OGLUM04G26010.1 133 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 189 688999************************************************995 PP | |||||||
2 | START | 204.1 | 5.6e-64 | 323 | 548 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE.........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-S CS START 1 elaeeaaqelvkkalaeepgWvkss.........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetla 77 ela +a++elv++a+++ep+W+ + e + ++e+ + f+++ + ++ea+r+s+vv+m++a+lve+l+d ++ +++ + OGLUM04G26010.1 323 ELAVAAMEELVRMAQLDEPLWSVAPpldaaaaamETLSEEEYARMFPRGLGpkqygLRSEASRDSAVVIMTHANLVEILMDANQyaaVFSNIVS 416 57899********************9*9999999999999999999887779*******************************66666666666 PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164 +a tlev+s+g galq+m+ e+q++splvp R+++fvRy++q +g+w++vdvS+ds ++ p v +++++pSg+li++++ng+skv OGLUM04G26010.1 417 RAVTLEVLSTGvagnynGALQVMSVEFQVPSPLVPtRESYFVRYCKQNADGTWAVVDVSLDSLRPSP----VLKCRRRPSGCLIQEMPNGYSKV 506 *****************************************************************98....7********************** PP EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 twvehv++++r++h++++ lv+sgla+ga++wv tl+rqce+ OGLUM04G26010.1 507 TWVEHVEVDDRSVHNIYKLLVNSGLAFGARRWVGTLDRQCER 548 ****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-22 | 113 | 188 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.1E-20 | 120 | 190 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.07 | 130 | 190 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-20 | 131 | 194 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.53E-19 | 132 | 191 | No hit | No description |
Pfam | PF00046 | 4.6E-18 | 133 | 188 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 165 | 188 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 41.731 | 314 | 551 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.13E-34 | 316 | 550 | No hit | No description |
CDD | cd08875 | 4.75E-119 | 318 | 547 | No hit | No description |
SMART | SM00234 | 9.5E-59 | 323 | 548 | IPR002913 | START domain |
Pfam | PF01852 | 5.0E-54 | 324 | 548 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 5.3E-6 | 388 | 544 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.39E-12 | 569 | 784 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 838 aa Download sequence Send to blast |
MIPARHMPSM IGRNGAAYGS SSALSLSQID RTMERREIFQ VADLAHILRG KPVDHLQQPN 60 LLDNHQFQQA FQHQQQQHHL LDQIPATTAE SGDNMIRSRA SDPLGDEFES KSGSENVDGV 120 SVDDQDPNQR PRKKRYHRHT QHQIQEMEAF FKECPHPDDK QRKELSRELG LEPLQVKFWF 180 QNKRTQMKNQ HERHENSQLR SDNEKLRAEN MRYKEALSSA SCPNCGGPAA LGEMSFDEHH 240 LRIENARLRE EIDRISAIAA KYVGKPMVPF PVLSNPMAAA ASRAPLDLPV APYGVPGDMF 300 GGGGAGELLR GVQSEVDKPM IVELAVAAME ELVRMAQLDE PLWSVAPPLD AAAAAMETLS 360 EEEYARMFPR GLGPKQYGLR SEASRDSAVV IMTHANLVEI LMDANQYAAV FSNIVSRAVT 420 LEVLSTGVAG NYNGALQVMS VEFQVPSPLV PTRESYFVRY CKQNADGTWA VVDVSLDSLR 480 PSPVLKCRRR PSGCLIQEMP NGYSKVTWVE HVEVDDRSVH NIYKLLVNSG LAFGARRWVG 540 TLDRQCERLA SVMASNIPTS DIGVITSSEG RKSMLKLAER MVVSFCGGVT ASVAHQWTTL 600 SGSGAEDVRV MTRKSVDDPG RPPGIVLNAA TSFWLPWDIL SNGGIVQEMA HIANGRDQGN 660 CVSLLRVNSS NSNQSNMLIL QESCTDASGS YVIYAPVDVV AMNVVLNGGD PDYVALLPSG 720 FAILPDGPAH DGGGGDGGVG VGSGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIACTV 780 ERIKAAVSGE SNPQSSKILE LSSVGSQERT SDCPCHVFFL AASMKAMLIS VSSSGRVV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB101645 | 0.0 | AB101645.1 Oryza sativa Japonica Group Roc2 mRNA for GL2-type homeodomain protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636340.1 | 0.0 | homeobox-leucine zipper protein ROC2 isoform X2 | ||||
Swissprot | Q0J9X2 | 0.0 | ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2 | ||||
TrEMBL | A0A0D9ZR24 | 0.0 | A0A0D9ZR24_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM04G26010.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP799 | 38 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Publications ? help Back to Top | |||
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