PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G25460.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 339aa    MW: 36777.2 Da    PI: 8.8948
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G25460.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1553.3e-48111791128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpk.........................kvkaeekewyfFsk 63 
                      lppGfrFhP deelvv+yL +k++g        +    ++ +vd++k+ePw+Lp+                         +++ + +ewyfFs 
  OGLUM04G25460.2  11 LPPGFRFHPMDEELVVDYLYHKLSGGGgggageFYGGVAMVDVDLNKCEPWELPAyflhnliifparararaagrrrradAARVGATEWYFFSL 104
                      79**********************9997776543332359**************6699**********9999998887664445888******* PP

              NAM  64 rdkkyatgkrknratksgyWkatgkdkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +d+kyatg+r+nrat+sgyWkatgkd++++++          +ge+vg++ktLvfy+grap+g+kt+Wvmhe+r+
  OGLUM04G25460.2 105 HDRKYATGQRTNRATRSGYWKATGKDRAIVTRrraaageavaGGEVVGMRKTLVFYQGRAPRGSKTEWVMHEFRV 179
                      *******************************977777777776777***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.27E-493212IPR003441NAC domain
PROSITE profilePS5100550.90611212IPR003441NAC domain
PfamPF023651.5E-2512179IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MSLISMMEAN LPPGFRFHPM DEELVVDYLY HKLSGGGGGG AGEFYGGVAM VDVDLNKCEP  60
WELPAYFLHN LIIFPARARA RAAGRRRRAD AARVGATEWY FFSLHDRKYA TGQRTNRATR  120
SGYWKATGKD RAIVTRRRAA AGEAVAGGEV VGMRKTLVFY QGRAPRGSKT EWVMHEFRVD  180
GHAVADHPSS STSSSSSNLL KEDWVLCRVF YKSRTANPRP VVSGEAAVSL SGELSLPPPP  240
PLPVAPAVVD GYTGGGYYEQ DSSAGYHHHH HRPPTSAALP FKDLTDFRDL LSNMVQGGGG  300
GAAAAAAAKS EGFHLGWSEE ESSGYVQQSA MASQAWNPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-41621712170NO APICAL MERISTEM PROTEIN
1ut4_B8e-41621712170NO APICAL MERISTEM PROTEIN
1ut7_A8e-41621712170NO APICAL MERISTEM PROTEIN
1ut7_B8e-41621712170NO APICAL MERISTEM PROTEIN
3swm_A9e-41621715173NAC domain-containing protein 19
3swm_B9e-41621715173NAC domain-containing protein 19
3swm_C9e-41621715173NAC domain-containing protein 19
3swm_D9e-41621715173NAC domain-containing protein 19
3swp_A9e-41621715173NAC domain-containing protein 19
3swp_B9e-41621715173NAC domain-containing protein 19
3swp_C9e-41621715173NAC domain-containing protein 19
3swp_D9e-41621715173NAC domain-containing protein 19
4dul_A8e-41621712170NAC domain-containing protein 19
4dul_B8e-41621712170NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8376680.0CT837668.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124G03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633392.11e-164NAC domain-containing protein 21/22
TrEMBLA0A0D9ZQS60.0A0A0D9ZQS6_9ORYZ; Uncharacterized protein
STRINGOGLUM04G25460.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.11e-58NAC family protein