PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM04G23960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 251aa MW: 27974.9 Da PI: 9.2938 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.4 | 7.9e-34 | 23 | 77 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LHerFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl OGLUM04G23960.1 23 KPRLRWTPDLHERFVDAVTRLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 77 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-33 | 20 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.502 | 20 | 80 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.43E-16 | 23 | 79 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-24 | 23 | 78 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.4E-9 | 25 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.2E-21 | 96 | 138 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MFEGCYGGVG SAAAAAAATR DPKPRLRWTP DLHERFVDAV TRLGGPDKAT PKSVLRLMGM 60 KGLTLYHLKS HLQKYRLGRQ SKKSAGLELA VADSGDALKY QVEVQRKLQE QLEVQKKLQM 120 RIEAQGRYLK EILEKAQKNI SLDANGSANL SSTRSQITDI NLALSGFMDN ATQVQEENNE 180 LMKPISDDNL KVNNLGFQLY HLGSQESKDV KCTPKTEELL LLDLNIQGGY ELSSRGMQGC 240 ELDLKINQQR R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-21 | 23 | 79 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-21 | 23 | 79 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-21 | 23 | 79 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-21 | 23 | 79 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106400 | 0.0 | AK106400.1 Oryza sativa Japonica Group cDNA clone:002-102-G05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635408.1 | 1e-171 | myb family transcription factor PHL11 isoform X1 | ||||
Refseq | XP_015635409.1 | 1e-171 | myb family transcription factor PHL11 isoform X2 | ||||
Swissprot | C0SVS4 | 3e-60 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A0D9ZQ57 | 0.0 | A0A0D9ZQ57_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM04G23960.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3940 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 2e-47 | G2-like family protein |
Publications ? help Back to Top | |||
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