PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G22780.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 400aa    MW: 42805.7 Da    PI: 7.128
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G22780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B394.29.2e-3087175185
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      f+kv tpsdv+k++rlv+pk++ae++    +  +e++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F + 
  OGLUM04G22780.1  87 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSAANEKGLLLSFEDRTGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCRG 175
                      89***************************955556889************************************************854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.0E-4178192IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.62E-2984175IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-2485172No hitNo description
SMARTSM010194.7E-2187192IPR003340B3 DNA binding domain
PfamPF023629.1E-2787190IPR003340B3 DNA binding domain
PROSITE profilePS5086313.73387192IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MEQEQDEEEE EAEASPREIP FMTSAAAAAT ASSSSPTSVS PSATASAAAS TSASGSPFRS  60
SDGAGASGSG GGGGGEDVEV IEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSAAN  120
EKGLLLSFED RTGKLWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFCRGAAEAT  180
RDRLFIDWKR RADVRDPHRF QRLPLPMTSP YGPWGGGAGA FFMPPAPPAT LYEHHRFRQG  240
FDFRNINPAV PARQLVFFGS PGTGIHQHPP LPPPPPPPPP PHQLHITVHH PSPVVTAGLP  300
MVVDSVPHVN NPAAASKRVR LFGVNLDNPH PDGGQSSSGH DANALSLRMP GWQRPAPLRS  360
LELPPHVPAG AAGAESSAAS SPSSSSSSKR EAHSSLDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-61821913113B3 domain-containing transcription factor NGA1
5os9_B3e-61821913113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634107.10.0LOW QUALITY PROTEIN: B3 domain-containing protein Os04g0581400-like
SwissprotQ6EU301e-122Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A0D9ZPP90.0A0A0D9ZPP9_9ORYZ; Uncharacterized protein
STRINGOGLUM04G22780.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.16e-62B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]