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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OGLUM04G22100.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 868aa MW: 92831.1 Da PI: 5.4443 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 70.8 | 1.7e-22 | 122 | 177 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++ +++t++q++eLe++F+++++p++++r+eL+k+lgL+ rqVk+WFqNrR+++k
OGLUM04G22100.1 122 KKRYHRHTPQQIQELEAMFKECPHPDEKQRAELSKRLGLEPRQVKFWFQNRRTQMK 177
688999***********************************************998 PP
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| 2 | START | 140.9 | 1.3e-44 | 333 | 599 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCH.HHHHHHHHCCCGG.....CT-TT- CS
START 2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvdmv.lallveellddke.....qWdetl 76
la +a++elvk+a+ ++p+W + es+n +e+l +f++ + + +ea+r+sg+v+ + a lve+l+d e +W+ ++
OGLUM04G22100.1 333 LAMSAMDELVKMAQMGDPLWIPGAsvpsspakESLNFEEYLNTFPPCIGvkpegYVSEASRESGIVIIDdGAALVETLMDEFEflrqrRWSDMF 426
67899***************9766667999****************9999**************998651568********************* PP
S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEE CS
START 77 a....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgili 154
ka+t+e is+g gal lm+aelq+lsplvp R++ f+R+++ql +g+w++vdvS d+ + s + +++lpSg+++
OGLUM04G22100.1 427 ScmiaKASTTEEISTGvagsrnGALLLMQAELQVLSPLVPiREVKFLRFSKQLADGVWAVVDVSADELMRDQGitsasSTANMNCRRLPSGCVL 520
*****************************************************************9987666666454555689********** PP
EEECTCE...........................EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
START 155 epksngh...........................skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
++++ng vtwveh++++++++h l+r+l++sgla ga +w atlqrqce+
OGLUM04G22100.1 521 QDTPNGFvkylvqisvfsevynlsidqfldlppaFMVTWVEHTEYDEASVHPLYRPLLRSGLALGAGRWIATLQRQCEC 599
*********************************99******************************************96 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF46689 | 8.77E-22 | 106 | 177 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 2.1E-24 | 108 | 179 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS50071 | 18.366 | 119 | 179 | IPR001356 | Homeobox domain |
| SMART | SM00389 | 3.2E-20 | 120 | 183 | IPR001356 | Homeobox domain |
| CDD | cd00086 | 1.27E-20 | 121 | 177 | No hit | No description |
| Pfam | PF00046 | 8.2E-20 | 122 | 177 | IPR001356 | Homeobox domain |
| PRINTS | PR00031 | 9.8E-5 | 150 | 159 | IPR000047 | Helix-turn-helix motif |
| PROSITE pattern | PS00027 | 0 | 154 | 177 | IPR017970 | Homeobox, conserved site |
| PRINTS | PR00031 | 9.8E-5 | 159 | 175 | IPR000047 | Helix-turn-helix motif |
| PROSITE profile | PS50848 | 40.163 | 323 | 602 | IPR002913 | START domain |
| SuperFamily | SSF55961 | 6.59E-18 | 326 | 526 | No hit | No description |
| CDD | cd08875 | 1.87E-97 | 327 | 598 | No hit | No description |
| SMART | SM00234 | 3.2E-28 | 332 | 599 | IPR002913 | START domain |
| Pfam | PF01852 | 1.6E-36 | 333 | 599 | IPR002913 | START domain |
| SuperFamily | SSF55961 | 6.59E-18 | 554 | 599 | No hit | No description |
| SuperFamily | SSF55961 | 2.75E-15 | 619 | 833 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0008289 | Molecular Function | lipid binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 868 aa Download sequence Send to blast |
MSFGVGDHFG DGVVPAGMQF PFSGAGPGVF TSSPALSLAL ADAVAGLNSG GGGKMVTAAH 60 GGVGGGGGGG RAKARDALEV ENEMSRSGSD HLDVVSCGDA GGGGGDDDDD EDAEHGNPPK 120 RKKRYHRHTP QQIQELEAMF KECPHPDEKQ RAELSKRLGL EPRQVKFWFQ NRRTQMKMQL 180 ERHENALLKQ ENDKLRSENL SIREATSNAV CVGCGGPAML GEVSLEEHHL RVENARLKDE 240 LSRVCALAAK FLGKSISVMA PPQMHQPHPV PGSSLELAVG GIGSMPSATM PISTITDFAG 300 AMSSSMGTVI TPMKSEAEPS AMAGIDKSLF LELAMSAMDE LVKMAQMGDP LWIPGASVPS 360 SPAKESLNFE EYLNTFPPCI GVKPEGYVSE ASRESGIVII DDGAALVETL MDEFEFLRQR 420 RWSDMFSCMI AKASTTEEIS TGVAGSRNGA LLLMQAELQV LSPLVPIREV KFLRFSKQLA 480 DGVWAVVDVS ADELMRDQGI TSASSTANMN CRRLPSGCVL QDTPNGFVKY LVQISVFSEV 540 YNLSIDQFLD LPPAFMVTWV EHTEYDEASV HPLYRPLLRS GLALGAGRWI ATLQRQCECL 600 ALLMSSIALP ENDSSAIHPE GKRSMLKLAR RMTDNFCAGV STSSTREWSK LVGLTGNIGE 660 DVHVMARKSV DEPGTPPGVV LSAATSVWMP VMPERLFNFL HNKGLRAEWD ILSNGGPMQE 720 VTSIAKGQQN GNTVCLLKAS SSVPLTKNFT VQPTKDKQNS MLILQETCAD ASGSMVVYAP 780 VDIPAMHLVM SGGDSSCVAL LPSGFAILPA GPSIGADHKM GGSLLTVAFQ ILANSQPSAK 840 LTVESVETVS NLISCTIKKI KTALHCDV |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor. {ECO:0000250}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK111914 | 0.0 | AK111914.1 Oryza sativa Japonica Group cDNA clone:J033128F17, full insert sequence. | |||
| GenBank | AK112099 | 0.0 | AK112099.1 Oryza sativa Japonica Group cDNA clone:002-108-E06, full insert sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015637147.1 | 0.0 | homeobox-leucine zipper protein ROC4 | ||||
| Swissprot | Q7Y0V9 | 0.0 | ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4 | ||||
| TrEMBL | A0A0D9ZPF8 | 0.0 | A0A0D9ZPF8_9ORYZ; Uncharacterized protein | ||||
| STRING | OGLUM04G22100.1 | 0.0 | (Oryza glumipatula) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP1203 | 37 | 116 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G00730.1 | 0.0 | HD-ZIP family protein | ||||
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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