PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G22040.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 404aa MW: 41298.3 Da PI: 7.8834

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G22040.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.7	3e-39	100	161	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss OGLUM04G22040.1 100 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 161 67999*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	100	158	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-33	102	158	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	104	158	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	106	142	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MRDILFSLSL LLKKSTSCCI RRWSSLVVFV FVALRLLRCP EEQELLGGSE VDAVGEPSCM 60 DAAHWHQGLG LVKPMEEMLM AANAAAGANP NPAATAPSSK EKALNCPRCN STNTKFCYYN 120 NYSLQQPRYF CKTCRRYWTE GGSLRNVPVG GGSRKNKRSS SSAASASPAS ASTANSVVTS 180 ASMSMSMAST GGGASKNPKL VHEGAQDLNL AFPHHGGLQA PGEFPAFPSL ESSSVCNPGG 240 PMGTNGRGGG ALSAMELLRS TGCYMPLQVP MQMPAEYATP GFALGEFRAP PPPPQSSQSL 300 LGFSLDAHGS VGGPSAAGFG SSAGLQGVPE STGRLLFPFE DLKPTVSSGT GGGGASGGGA 360 GVDGGHQFDH GKEQQAGGGG GGPGGHDTPG FWNGMIGGGS GTSW

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MRDILFSLSL LLKKSTSCCI RRWSSLVVFV FVALRLLRCP EEQELLGGSE VDAVGEPSCM  60
DAAHWHQGLG LVKPMEEMLM AANAAAGANP NPAATAPSSK EKALNCPRCN STNTKFCYYN  120
NYSLQQPRYF CKTCRRYWTE GGSLRNVPVG GGSRKNKRSS SSAASASPAS ASTANSVVTS  180
ASMSMSMAST GGGASKNPKL VHEGAQDLNL AFPHHGGLQA PGEFPAFPSL ESSSVCNPGG  240
PMGTNGRGGG ALSAMELLRS TGCYMPLQVP MQMPAEYATP GFALGEFRAP PPPPQSSQSL  300
LGFSLDAHGS VGGPSAAGFG SSAGLQGVPE STGRLLFPFE DLKPTVSSGT GGGGASGGGA  360
GVDGGHQFDH GKEQQAGGGG GGPGGHDTPG FWNGMIGGGS GTSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028129	0.0	AB028129.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-18.
GenBank	AL662954	0.0	AL662954.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0005N02, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015637008.1	1e-171	dof zinc finger protein 1 isoform X1
Swissprot	Q9SXG8	1e-172	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	A0A0D9ZPE6	0.0	A0A0D9ZPE6_9ORYZ; Uncharacterized protein
STRING	OGLUM04G22040.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	9e-40	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]