PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G20760.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 247aa    MW: 26222 Da    PI: 4.5625
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G20760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-1963112255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr ++ +g+Wv+eIr+p++   + r++lg+f+tae+Aa+a++ a+++++g
  OGLUM04G20760.1  63 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFDTAEMAARAHDVAALAIKG 112
                      69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-2263121IPR016177DNA-binding domain
PfamPF008475.3E-1363112IPR001471AP2/ERF domain
PROSITE profilePS5103223.35463120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-3363121IPR001471AP2/ERF domain
SMARTSM003807.3E-3863126IPR001471AP2/ERF domain
CDDcd000187.90E-3464122No hitNo description
PRINTSPR003673.2E-116475IPR001471AP2/ERF domain
PRINTSPR003673.2E-1186102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEQEQVMSQE SNSCTCSSSS NDASSAACSS LNASSPSSVD SGSAGGGGGG KKRPRSDHLK  60
HPTYRGVRMR SWGKWVSEIR EPRKKSRIWL GTFDTAEMAA RAHDVAALAI KGRTAHLNFP  120
DLTHLLPRAA SASPKDVQAA AALAAATASP APALSPTPCH DVDAAADDEP EPAEPEQATA  180
PVCIVENGTL QQDGGTGLDY TYFTMPDALL EFGFTLPPPP PPYYCGSPWD DDADDFFFGE  240
PMVLWEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-18601201172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880927.10.0ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ73e-44ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0D9ZNW60.0A0A0D9ZNW6_9ORYZ; Uncharacterized protein
STRINGOGLUM04G20760.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.17e-43ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]