PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G20210.3
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 659aa    MW: 71331.9 Da    PI: 9.4319
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G20210.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix100.51.4e-3198182187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+++e+laLi++r+em+ ++r++ lk+plWeevs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f++lea
  OGLUM04G20210.3  98 RWPREETLALIRIRSEMDATFRDATLKGPLWEEVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFTELEA 182
                      8*********************************************************************866665..******985 PP
2trihelix1086.2e-34490574186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW+k ev+aLi++r e++ r++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+
  OGLUM04G20210.3 490 RWPKTEVQALIQLRMELDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLD 574
                      8*********************************************************************8.99**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.18991155IPR017877Myb-like domain
SMARTSM007172.1E-495157IPR001005SANT/Myb domain
CDDcd122031.01E-2997162No hitNo description
PfamPF138372.9E-2297183No hitNo description
PROSITE profilePS500907.805483547IPR017877Myb-like domain
SMARTSM007178.3E-6487549IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-4489546IPR009057Homeodomain-like
PfamPF138375.8E-23489575No hitNo description
CDDcd122034.83E-29490554No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MQQHQGGGSQ YGAVPPDMGP FSPTHHASAP APLPLSSRPP PAALSQPPPP QQQQQPRTSY  60
DELAAATSAG AGGFPDDDML GDAGGSGGGG GSGAAGNRWP REETLALIRI RSEMDATFRD  120
ATLKGPLWEE VSRKLAELGY KRSAKKCKEK FENVHKYYKR TKEGRAGRQD GKSYRFFTEL  180
EALHAAAPQT PQPQQHQQQQ LPPVTSSAPA MHAFAPPVPA PPPMSVMPPP PGPIQPAPIS  240
SAAPAVPLEL PPQPPINLQS LSFSSMSGSE SDDESEDDEM TAETGGSQDR LGKRKRGAGG  300
KRLATFFEGL IKQVVDRQEE MQRRFLETME KREAERTARE EAWRRQEVAR LNREQEQLAQ  360
ERAAAASRDA AIISFLQRIG GQSVQVPPAA TVIQMPTPVQ LQTPPPVKQP ARQHQPQPTP  420
PPPQAAPIPA APLQQQPPQP QHKETIHHEA VTPRSAPPTS GSSLELVPAA EQHVESGLGG  480
GEGGSASSSR WPKTEVQALI QLRMELDMRY QETGPKGPLW EEISSGMRRL GYNRSSKRCK  540
EKWENINKYF KKVKESNKKR PEDSKTCPYF HQLDVIYRRK HLTGGGGGGA SAANVAAMAI  600
EHQNPNRHEI EGKNINDNDK RKNGGGGGAQ VPTSNGDTAP TTATFDVDSG MKKVISILA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140148KRSAKKCKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX682610.0X68261.1 O.sativa gt-2 gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880668.10.0trihelix transcription factor GTL1 isoform X1
TrEMBLA0A0D9ZNP50.0A0A0D9ZNP5_9ORYZ; Uncharacterized protein
STRINGOGLUM04G20210.20.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.14e-48Trihelix family protein