PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G18300.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 392aa    MW: 43587.9 Da    PI: 8.3116
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G18300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.64e-09661797126
              NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                      F+Pt e++v++yL  + + +   l + ++++d+y ++P  L     +a+e+ ew+fF++r++    g  ++ra   g  + + + k   +   +
  OGLUM04G18300.1  66 FDPTAEDIVNRYLPWRRALRCDALPRQVHDADVYGAHPALLAsVYPAANERfEWFFFVCRRRCP-GG--RRRA-GPGDYRLSQEAK---H---R 149
                      9************87766666666667**************83333344457******998854.33..2333.445555444322...2...2 PP

              NAM  99 lvglkktLvfykgrapkg..ektdWvmhey 126
                           +++ +y+ ++  g  ++t+W m ey
  OGLUM04G18300.1 150 GNAFCHSFRYYEYEDAGGgfRETEWRMVEY 179
                      235667888886655544235899999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.98760204IPR003441NAC domain
SuperFamilySSF1019413.01E-2265202IPR003441NAC domain
PfamPF023658.5E-766179IPR003441NAC domain
PROSITE profilePS5100512.665222386IPR003441NAC domain
SuperFamilySSF1019412.75E-20233384IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MRPRASQAAA PETAAAAASL REEETEDGWV FLAGRSRATR PPPPPPSPMA RAVASGGSGG  60
GGVQPFDPTA EDIVNRYLPW RRALRCDALP RQVHDADVYG AHPALLASVY PAANERFEWF  120
FFVCRRRCPG GRRRAGPGDY RLSQEAKHRG NAFCHSFRYY EYEDAGGGFR ETEWRMVEYG  180
DRGRDAGAGG SEGFELVVCK VYPARGGALH ERLGADRAAL ATRHRADEDA KPQVLVQLYL  240
ASLRLGNPLA CRVHRADDVF DAHPAVITAA LPAANDRCEW LFAAVRPRGH AQGHGDGAPP  300
RPRKAGPGAY VPVRECRVVD GRRGDMGCRL VFWYREDDEE ARLASRRTEW WMDEYRFGPD  360
FPYGELPAPM ARGEDEELVV YKVYPRLVGN RR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629690.0AL662969.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCR8552130.0CR855213.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0101P20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634867.10.0uncharacterized protein LOC9267434
TrEMBLA0A0D9ZMZ80.0A0A0D9ZMZ8_9ORYZ; Uncharacterized protein
STRINGOGLUM04G18300.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147671819