PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G17360.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 929aa MW: 100855 Da PI: 6.153

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G17360.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.8	1e-28	558	609	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l+kyFs+++kdAAk+Lgvc+T+LKriCR++GI RWP+Rki+++ OGLUM04G17360.1 558 AEKNISLDVLRKYFSGSLKDAAKSLGVCPTTLKRICRHHGILRWPSRKINKV 609 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.836	544	629	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-25	561	609	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.05E-24	818	910	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.2E-22	824	906	No hit	No description
SMART	SM00666	4.4E-22	827	909	IPR000270	PB1 domain
PROSITE profile	PS51745	26.738	827	909	IPR000270	PB1 domain
Pfam	PF00564	2.2E-17	828	908	IPR000270	PB1 domain
CDD	cd06407	1.05E-29	828	908	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 929 aa Download sequence Send to blast
MDMPSPSNRA GCNGNTGGTM GPSDDPYGAA AMNLDCYSEI YSPSVADQLF SLLNDPAAHR 60 MFAMWPSMGS SPCAAGTSED MPLDAYSGLG EAVEEPSQIM SVNPTEAEKT GKSSGELGSD 120 DGAHQGSSMV PRSVVGSSLA DRMLMALSLF RESLGSGALA QVWMPVEQEG HVVLSTCEQP 180 FLLDQVLAGY REVSRHFVFS AKEEPGLQPG LPGRVFISGV PEWTSSVLYY NRPEYLRMEH 240 ALHHEIRGSL AMPIYDPSKD SCCAVFELVT RKEKPDFSAE MDNAVNLKAT KGSSNQKFYT 300 ENQKFAFTEI LDVLRAICHA HMLPLALTWV PTSNGIDGGY VVGKDGASFS QSGKTIIRIH 360 ESACYVNDGK MQGFLQACAR RHLEKGQGIA GRALKSNLPF FSPDIREYSI EDYPLAHHAR 420 KFSLHAAVAI RLRSTYTGKD DYILEFFLPV SCKGSGEQQM LLNNLSSTMQ RICKSLRTVY 480 EAEVDNVNAG TAAVFRKNNE SCLPTGHTES SSHGDQSITG ASFEDTSLAN KPGVMEPELA 540 EQVQPSSIGH AEKKRSTAEK NISLDVLRKY FSGSLKDAAK SLGVCPTTLK RICRHHGILR 600 WPSRKINKVN RSLKKIQTVI NSVHGVDRSL QYDPATGSLV PVVSLPEKLT FPSCDGLPTP 660 SVGKTVEENS DLKSEEGCSL PDGSQRQSCQ LQISDVKKSN EDEFHIGSGN SDFYGANATA 720 KSNSEVTQGP LCPTGAFSAL HLKGTDCTNP SSSLRPSSES TRNQIVGRNS PSIQQDLDML 780 DNHEAEDKDH MHPSTSGMTD SSSGSASSHP TFKQNTRSAL KDAASPALTV KATYNGDTVR 840 FKFLPSMGWY HLLEEIAKRF KLPTGAFQLK YKDDEDEWVI LANDSDLQEC VDVLDSIGSR 900 IVKLQVRDLP CIVSSSGSST CLQLAAHSS

Sequence ? help Back to Top

Protein Sequence Length: 929 aa Download sequence Send to blast

MDMPSPSNRA GCNGNTGGTM GPSDDPYGAA AMNLDCYSEI YSPSVADQLF SLLNDPAAHR  60
MFAMWPSMGS SPCAAGTSED MPLDAYSGLG EAVEEPSQIM SVNPTEAEKT GKSSGELGSD  120
DGAHQGSSMV PRSVVGSSLA DRMLMALSLF RESLGSGALA QVWMPVEQEG HVVLSTCEQP  180
FLLDQVLAGY REVSRHFVFS AKEEPGLQPG LPGRVFISGV PEWTSSVLYY NRPEYLRMEH  240
ALHHEIRGSL AMPIYDPSKD SCCAVFELVT RKEKPDFSAE MDNAVNLKAT KGSSNQKFYT  300
ENQKFAFTEI LDVLRAICHA HMLPLALTWV PTSNGIDGGY VVGKDGASFS QSGKTIIRIH  360
ESACYVNDGK MQGFLQACAR RHLEKGQGIA GRALKSNLPF FSPDIREYSI EDYPLAHHAR  420
KFSLHAAVAI RLRSTYTGKD DYILEFFLPV SCKGSGEQQM LLNNLSSTMQ RICKSLRTVY  480
EAEVDNVNAG TAAVFRKNNE SCLPTGHTES SSHGDQSITG ASFEDTSLAN KPGVMEPELA  540
EQVQPSSIGH AEKKRSTAEK NISLDVLRKY FSGSLKDAAK SLGVCPTTLK RICRHHGILR  600
WPSRKINKVN RSLKKIQTVI NSVHGVDRSL QYDPATGSLV PVVSLPEKLT FPSCDGLPTP  660
SVGKTVEENS DLKSEEGCSL PDGSQRQSCQ LQISDVKKSN EDEFHIGSGN SDFYGANATA  720
KSNSEVTQGP LCPTGAFSAL HLKGTDCTNP SSSLRPSSES TRNQIVGRNS PSIQQDLDML  780
DNHEAEDKDH MHPSTSGMTD SSSGSASSHP TFKQNTRSAL KDAASPALTV KATYNGDTVR  840
FKFLPSMGWY HLLEEIAKRF KLPTGAFQLK YKDDEDEWVI LANDSDLQEC VDVLDSIGSR  900
IVKLQVRDLP CIVSSSGSST CLQLAAHSS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK060753	0.0	AK060753.1 Oryza sativa Japonica Group cDNA clone:001-032-G10, full insert sequence.
GenBank	AK103154	0.0	AK103154.1 Oryza sativa Japonica Group cDNA clone:J033120P08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636521.1	0.0	protein NLP2
Refseq	XP_015636522.1	0.0	protein NLP2
Refseq	XP_015636523.1	0.0	protein NLP2
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	A0A0D9ZML4	0.0	A0A0D9ZML4_9ORYZ; Uncharacterized protein
STRING	OGLUM04G17360.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-178	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]