PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G16920.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 373aa    MW: 39502.4 Da    PI: 8.6567
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G16920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11301346655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+ l+P+     +k  s +++L +Av++Ik Lq
  OGLUM04G16920.1 301 SIAERERRTRISEKLRKLQALVPNM----DKQTSTSDMLDLAVDHIKGLQ 346
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.215295345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-15298361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-12299350No hitNo description
Gene3DG3DSA:4.10.280.107.9E-14300360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-13301351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-9301346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MNPAPSRAPQ RQQRGGEMSA RYGGGLQFFA DAPPAGVEGG AATARTFFPV PGGGGEQQPP  60
ERAMRQQHYG GGGSGAAEIS LGHGHGHGHG GQHHFHQFGV EAKDGGGGGG GDQSGFLTRH  120
NSSPPGFFSS PVMDNGFSSS ARPAGSSLGE VRHGAMSSSS NNNKKMKAPL SFASSRQGSG  180
GLSQISEDGI PDLTDSIHGA AHHHGRSEEN VSTHDHVVRS FSSGGFSIGS WEDSNSIVFS  240
TSTGKSGAHG NDDIIATLSN YESQLVAPRE MAGVEKYLQM QHDQVPFRVR AKRGCATHPR  300
SIAERERRTR ISEKLRKLQA LVPNMDKQTS TSDMLDLAVD HIKGLQSQLQ TLKEDKEKCT  360
CSCKQASRNR PAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680390.0AK068039.1 Oryza sativa Japonica Group cDNA clone:J013131B20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636683.10.0transcription factor bHLH129
TrEMBLA0A0D9ZMG50.0A0A0D9ZMG5_9ORYZ; Uncharacterized protein
STRINGOGLUM04G16920.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141882026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-44bHLH family protein