PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G16020.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 362aa    MW: 40163.9 Da    PI: 5.0462
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G16020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.22.1e-29592002128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........t 78 
                      p G++F+P+d e++ e+L++k++  +      ++ +   ++ v +i++++P++Lp  +k + ++ +fF++ +++y +g+rk+r+          
  OGLUM04G16020.1  59 PDGVKFDPSDLEVL-EHLERKINLGNpgpqglIDHFIPtLEGVeGICYTHPENLP-GIKLDGTSSHFFHRISNAYGSGQRKRRKishtghaasD 150
                      88**********99.99****998887887764443444777778**********.66778899*******************76776666554 PP

              NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                      ++ +W++tgk+k++++ +g l+g kk+Lv+ykg +++k ++++Wvmh+y+l
  OGLUM04G16020.1 151 ENIRWHKTGKSKQIYH-NGVLKGWKKILVLYKGsKKNKIVQANWVMHQYNL 200
                      4678************.99************996777889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.09E-3442219IPR003441NAC domain
PROSITE profilePS5100528.47358219IPR003441NAC domain
PfamPF023653.2E-1259200IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MARPWIIAGG KVIATKIRNA TQLLSCKLGE LVPEAWRECP NCKCHIDNSD VTLQWPEFPD  60
GVKFDPSDLE VLEHLERKIN LGNPGPQGLI DHFIPTLEGV EGICYTHPEN LPGIKLDGTS  120
SHFFHRISNA YGSGQRKRRK ISHTGHAASD ENIRWHKTGK SKQIYHNGVL KGWKKILVLY  180
KGSKKNKIVQ ANWVMHQYNL GVEEGGEDGE LVVSKVFYQL SSKQTGTPEM DSVTEEASDA  240
LTIRSDPITP ITNPPLPRCL MNSPCDTEQN GTISHDQEGE CSTSTLRPTV EPGNRAGCSA  300
GASTAGDFDE DLLQRCEFPG DPVPTLDDTL PFLYTDETDL FSWEDFQFGS QESFGWVDGD  360
HT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6303300.0AB630330.1 Oryza sativa Japonica Group BET1 mRNA for transcription factor, complete cds, cultivar: Wataribune.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653523.10.0PREDICTED: NAC domain-containing protein 8-like
TrEMBLA0A0D9ZM520.0A0A0D9ZM52_9ORYZ; Uncharacterized protein
STRINGOGLUM04G16020.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.13e-62NAC family protein